Package: mpra 1.34.0

Leslie Myint

mpra: Analyze massively parallel reporter assays

Tools for data management, count preprocessing, and differential analysis in massively parallel report assays (MPRA).

Authors:Leslie Myint [cre, aut], Kasper D. Hansen [aut]

mpra_1.34.0.tar.gz
mpra_1.34.0.zip(r-4.7)mpra_1.34.0.zip(r-4.6)mpra_1.34.0.zip(r-4.5)
mpra_1.34.0.tgz(r-4.6-any)mpra_1.34.0.tgz(r-4.5-any)
mpra_1.34.0.tar.gz(r-4.7-any)mpra_1.34.0.tar.gz(r-4.6-any)
mpra_1.34.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
mpra/json (API)
NEWS

# Install 'mpra' in R:
install.packages('mpra', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/hansenlab/mpra/issues

Datasets:

On BioConductor:mpra-1.35.0(bioc 3.24)mpra-1.34.0(bioc 3.23)

softwaregeneregulationsequencingfunctionalgenomics

6.10 score 6 stars 30 scripts 438 downloads 11 exports 29 dependencies

Last updated from:03a55cf162 (on RELEASE_3_23). Checks:8 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE164
linux-devel-x86_64NOTE320
source / vignettesOK224
linux-release-x86_64NOTE288
macos-release-arm64NOTE201
macos-oldrel-arm64NOTE178
windows-develNOTE196
windows-releaseNOTE181
windows-oldrelNOTE179
wasm-releaseOK127

Exports:compute_logratioget_precision_weightsgetBarcodegetDNAgetEidgetEseqgetRNAmpralmMPRASetnormalize_countsshow

Dependencies:abindBiobaseBiocGenericscliDelayedArrayfarvergenericsGenomicRangesglueIRangeslabelinglatticelifecyclelimmaMatrixMatrixGenericsmatrixStatsR6RColorBrewerrlangS4ArraysS4VectorsscalesSeqinfoSparseArraystatmodSummarizedExperimentviridisLiteXVector

The mpra User's Guide

Leslie Myint, Kasper Daniel Hansen

Rendered frommpra.Rmdusingknitr::rmarkdownon Jun 06 2026.

Last update: 2024-09-13
Started: 2017-08-26