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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "muleaData" in publications use:'
type: software
license: MIT
title: 'muleaData: Genes Sets for Functional Enrichment Analysis with the ''mulea''
  R Package'
version: 1.8.0
doi: 10.1101/2024.02.28.582444v1
identifiers:
- type: doi
  value: 10.32614/CRAN.package.muleaData
- type: doi
  value: 10.1101/2024.02.28.582444
abstract: ExperimentHubData package for the 'mulea' comprehensive overrepresentation
  and functional enrichment analyser R package. Here we provide ontologies (gene sets)
  in a data.frame for 27 different organisms, ranging from Escherichia coli to human,
  all acquired from publicly available data sources. Each ontology is provided with
  multiple gene and protein identifiers. Please see the NEWS file for a list of changes
  in each version.
authors:
- family-names: Ari
  given-names: Eszter
  email: arieszter@gmail.com
  orcid: https://orcid.org/0000-0001-7774-1067
- family-names: Ölbei
  given-names: Márton
  orcid: https://orcid.org/0000-0002-4903-6237
- family-names: Gul
  given-names: Lejla
- family-names: Bohár
  given-names: Balázs
  orcid: https://orcid.org/0000-0002-3033-5448
- family-names: Stirling
  given-names: Tamás
  orcid: https://orcid.org/0000-0002-8964-6443
preferred-citation:
  type: article
  title: mulea - an R package for enrichment analysis using multiple ontologies and
    empirical FDR correction.
  authors:
  - family-names: Turek
    given-names: Cezary
  - family-names: Olbei
    given-names: Marton
  - family-names: Stirling
    given-names: Tamas
  - family-names: Fekete
    given-names: Gergely
  - family-names: Tasnadi
    given-names: Ervin
  - family-names: Gul
    given-names: Leila
  - family-names: Bohar
    given-names: Balazs
  - family-names: Papp
    given-names: Balazs
  - family-names: Jurkowski
    given-names: Wiktor
  - family-names: Ari
    given-names: Eszter
    email: arieszter@gmail.com
    orcid: https://orcid.org/0000-0001-7774-1067
  year: '2024'
  doi: 10.1101/2024.02.28.582444v1
  publisher:
    name: Cold Spring Harbor Laboratory
  url: https://doi.org/10.1101/2024.02.28.582444
  journal: bioRxiv
  identifiers:
  - type: doi
    value: 10.1101/2024.02.28.582444
repository: https://bioconductor.org/
repository-code: https://github.com/ELTEbioinformatics/muleaData
commit: 6073bcb60f65ea5b31a16fb747da8dea32ed5021
url: https://support.bioconductor.org/tag/muleaData
date-released: '2023-11-20'
contact:
- family-names: Ari
  given-names: Eszter
  email: arieszter@gmail.com
  orcid: https://orcid.org/0000-0001-7774-1067