Package: muscle 3.54.0

Alex T. Kalinka

muscle: Multiple Sequence Alignment with MUSCLE

MUSCLE performs multiple sequence alignments of nucleotide or amino acid sequences.

Authors:Algorithm by Robert C. Edgar. R port by Alex T. Kalinka.

muscle_3.54.0.tar.gz
muscle_3.54.0.zip(r-4.7)muscle_3.54.0.zip(r-4.6)muscle_3.54.0.zip(r-4.5)
muscle_3.54.0.tgz(r-4.6-x86_64)muscle_3.54.0.tgz(r-4.6-arm64)muscle_3.54.0.tgz(r-4.5-x86_64)muscle_3.54.0.tgz(r-4.5-arm64)
muscle_3.54.0.tar.gz(r-4.7-arm64)muscle_3.54.0.tar.gz(r-4.7-x86_64)muscle_3.54.0.tar.gz(r-4.6-arm64)muscle_3.54.0.tar.gz(r-4.6-x86_64)
muscle_3.54.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
muscle/json (API)
NEWS

# Install 'muscle' in R:
install.packages('muscle', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • umax - Unaligned MAX sequences

On BioConductor:muscle-3.55.0(bioc 3.24)muscle-3.54.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

multiplesequencealignmentalignmentsequencinggeneticssequencematchingdataimportcpp

5.31 score 103 scripts 756 downloads 166 mentions 2 exports 8 dependencies

Last updated from:531568c48b (on RELEASE_3_23). Checks:1 ERROR, 11 WARNING, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR150
linux-devel-arm64WARNING181
linux-devel-x86_64WARNING241
source / vignettesOK232
linux-release-arm64WARNING169
linux-release-x86_64WARNING198
macos-release-arm64WARNING199
macos-release-x86_64WARNING407
macos-oldrel-arm64WARNING137
macos-oldrel-x86_64WARNING281
windows-develWARNING235
windows-releaseWARNING206
windows-oldrelWARNING205
wasm-releaseOK140

Exports:.muscleRmuscle

Dependencies:BiocGenericsBiostringscrayongenericsIRangesS4VectorsSeqinfoXVector

A guide to using muscle

Rendered frommuscle-vignette.Rnwusingutils::Sweaveon May 29 2026.

Last update: 2015-03-07
Started: 2015-03-07