Package: nempi
Type: Package
Title: Inferring unobserved perturbations from gene expression data
Version: 1.20.0
Authors@R: person("Martin", "Pirkl", 
    email = "martinpirkl@yahoo.de",
    role = c("aut", "cre"))
Depends: R (>= 4.1), mnem
Description: Takes as input an incomplete perturbation profile and
        differential gene expression in log odds and infers unobserved
        perturbations and augments observed ones. The inference is done
        by iteratively inferring a network from the perturbations and
        inferring perturbations from the network. The network inference
        is done by Nested Effects Models.
License: GPL-3
Encoding: UTF-8
biocViews: Software, GeneExpression, DifferentialExpression,
        DifferentialMethylation, GeneSignaling, Pathways, Network,
        Classification, NeuralNetwork, NetworkInference, ATACSeq,
        DNASeq, RNASeq, PooledScreens, CRISPR, SingleCell,
        SystemsBiology
Imports: e1071, nnet, randomForest, naturalsort, graphics, stats,
        utils, matrixStats, epiNEM
VignetteBuilder: knitr
Suggests: knitr, BiocGenerics, rmarkdown, RUnit, BiocStyle
BugReports: https://github.com/cbg-ethz/nempi/issues
URL: https://github.com/cbg-ethz/nempi/
RoxygenNote: 7.1.1
Config/pak/sysreqs: libglpk-dev libjpeg-dev libpng-dev libxml2-dev
        zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:54:36 UTC
RemoteUrl: https://github.com/bioc/nempi
RemoteRef: RELEASE_3_23
RemoteSha: 6c373eae74db4e2668c72f5e602ebc877e6ef447
NeedsCompilation: no
Packaged: 2026-07-03 23:27:22 UTC; root
Author: Martin Pirkl [aut, cre]
Maintainer: Martin Pirkl <martinpirkl@yahoo.de>