Package: nondetects 2.42.0

Valeriia Sherina

nondetects: Non-detects in qPCR data

Methods to model and impute non-detects in the results of qPCR experiments.

Authors:Matthew N. McCall <[email protected]>, Valeriia Sherina <[email protected]>

nondetects_2.42.0.tar.gz
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manual.pdf |manual.html✨
card.svg |card.png
nondetects/json (API)
NEWS

# Install 'nondetects' in R:
install.packages('nondetects', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • nature2008 - The qPCR data from McMurray _et al._ Nature 2008.
  • oncogene2013 - The qPCR data from Sampson _et al._ Oncogene 2013.
  • sagmb2011 - The qPCR data from Almudevar _et al._ SAGMB 2011.

On BioConductor:nondetects-2.43.0(bioc 3.24)nondetects-2.42.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwareassaydomaingeneexpressiontechnologyqpcrworkflowsteppreprocessing

3.90 score 20 scripts 345 downloads 2 mentions 1 exports 34 dependencies

Last updated from:5346dcd8d1 (on RELEASE_3_23). Checks:1 ERROR, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR154
linux-devel-x86_64OK351
source / vignettesOK264
linux-release-x86_64OK375
macos-release-arm64OK222
macos-oldrel-arm64OK196
windows-develOK315
windows-releaseOK351
windows-oldrelOK360
wasm-releaseOK117

Exports:qpcrImpute

Dependencies:abindaffyaffyioarmBiobaseBiocGenericsBiocManagerbitopsbootcaToolscodagenericsgplotsgtoolsHTqPCRKernSmoothlatticelimmalme4MASSMatrixminqamvtnormnlmenloptrpreprocessCorerbibutilsRColorBrewerRcppRcppEigenRdpackreformulasrlangstatmod

Non-detects in qPCR data: methods to model and impute non-detects in the results of qPCR experiments (nondetects)

Valeriia Sherina, Matthew N. McCall

Rendered fromnondetects.Rmdusingknitr::knitron May 29 2026.

Last update: 2017-12-21
Started: 2015-11-09