Package: nuCpos 1.30.0
Hiroaki Kato
nuCpos: An R package for prediction of nucleosome positions
nuCpos, a derivative of NuPoP, is an R package for prediction of nucleosome positions. nuCpos calculates local and whole nucleosomal histone binding affinity (HBA) scores for a given 147-bp sequence. Note: This package was designed to demonstrate the use of chemical maps in prediction. As the parental package NuPoP now provides chemical-map-based prediction, the function for dHMM-based prediction was removed from this package. nuCpos continues to provide functions for HBA calculation.
Authors:
nuCpos_1.30.0.tar.gz
nuCpos_1.30.0.zip(r-4.7-any)nuCpos_1.30.0.zip(r-4.6-any)nuCpos_1.30.0.zip(r-4.5-any)
nuCpos_1.30.0.tgz(r-4.6-any)nuCpos_1.30.0.tgz(r-4.5-any)
nuCpos_1.30.0.tar.gz(r-4.7-any)nuCpos_1.30.0.tar.gz(r-4.6-any)
nuCpos_1.30.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
nuCpos/json (API)
| # Install 'nuCpos' in R: |
| install.packages('nuCpos', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:nuCpos-1.31.0(bioc 3.24)nuCpos-1.30.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
geneticsepigeneticsnucleosomepositioning
Last updated from:2f18295810 (on RELEASE_3_23). Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 152 | ||
| linux-devel-x86_64 | NOTE | 142 | ||
| source / vignettes | OK | 194 | ||
| linux-release-x86_64 | NOTE | 139 | ||
| macos-release-arm64 | NOTE | 76 | ||
| macos-oldrel-arm64 | NOTE | 92 | ||
| windows-devel | NOTE | 81 | ||
| windows-release | NOTE | 76 | ||
| windows-oldrel | NOTE | 65 | ||
| wasm-release | OK | 98 |
Dependencies:
