Package: onlineFDR 2.20.0

David S. Robertson

onlineFDR: Online error rate control

This package allows users to control the false discovery rate (FDR) or familywise error rate (FWER) for online multiple hypothesis testing, where hypotheses arrive in a stream. In this framework, a null hypothesis is rejected based on the evidence against it and on the previous rejection decisions.

Authors:David S. Robertson [aut, cre], Lathan Liou [aut], Aaditya Ramdas [aut], Adel Javanmard [ctb], Andrea Montanari [ctb], Jinjin Tian [ctb], Tijana Zrnic [ctb], Natasha A. Karp [aut]

onlineFDR_2.20.0.tar.gz
onlineFDR_2.20.0.zip(r-4.7-x86_64)onlineFDR_2.20.0.zip(r-4.6-x86_64)onlineFDR_2.20.0.zip(r-4.5-x86_64)
onlineFDR_2.20.0.tgz(r-4.6-x86_64)onlineFDR_2.20.0.tgz(r-4.6-arm64)onlineFDR_2.20.0.tgz(r-4.5-x86_64)onlineFDR_2.20.0.tgz(r-4.5-arm64)
onlineFDR_2.20.0.tar.gz(r-4.7-arm64)onlineFDR_2.20.0.tar.gz(r-4.7-x86_64)onlineFDR_2.20.0.tar.gz(r-4.6-arm64)onlineFDR_2.20.0.tar.gz(r-4.6-x86_64)
onlineFDR_2.20.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
onlineFDR/json (API)

# Install 'onlineFDR' in R:
install.packages('onlineFDR', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/dsrobertson/onlinefdr/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:onlineFDR-2.21.0(bioc 3.24)onlineFDR-2.20.0(bioc 3.23)

multiplecomparisonsoftwarestatisticalmethoderror-rate-controlfdrfwerhypothesis-testingcpp

7.26 score 15 stars 50 scripts 1 mentions 19 exports 13 dependencies

Last updated from:864a781add (on RELEASE_3_23). Checks:1 WARNING, 13 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksWARNING206
linux-devel-arm64OK138
linux-devel-x86_64OK268
source / vignettesOK255
linux-release-arm64OK142
linux-release-x86_64OK230
macos-release-arm64OK107
macos-release-x86_64OK299
macos-oldrel-arm64OK111
macos-oldrel-x86_64OK361
windows-devel-x86_64OK143
windows-release-x86_64OK132
windows-oldrel-x86_64OK134
wasm-releaseOK142

Exports:ADDISADDIS_spendingAlpha_investingAlpha_spendingBatchBHBatchPRDSBatchStBHbonfInfiniteLONDLONDstarLORDLORDdepLORDstaronline_fallbackSAFFRONSAFFRONstarsetBoundStoreyBHsupLORD

Dependencies:clicrayongluehmslifecyclepkgconfigprettyunitsprogressR6RcppRcppProgressrlangvctrs

Advanced usage of onlineFDR
Brief Background of the onlineFDR algorithms | Variations to the default options | Common arguments | LOND | LORD | SAFFRON | ADDIS | Alpha-spending and online fallback | ADDIS-spending | Asynchronous testing
Rendered fromadvanced-usage.Rmdusingknitr::rmarkdown

Last update: 2022-08-25
Started: 2020-10-30

The theory behind onlineFDR
FDR Control | LOND | LORD | SAFFRON | Alpha-investing | ADDIS | FWER Control | Alpha-spending | Online Fallback | ADDIS-spending | Accounting for dependent p-values
Rendered fromtheory.Rmdusingknitr::rmarkdown

Last update: 2022-08-25
Started: 2020-10-30

Managing online multiple hypothesis testing using the onlineFDR package
What is onlineFDR? | Which algorithm do I use? | Frequently Asked Questions | Quick Start | General Info | Input data | What happens to the input data | Understanding the output | Using onlineFDR Exploratively | Using onlineFDR over time | More Advanced Use Cases | Batch Setting | Setting a Bound | API | Online FDR Control | Batch FDR Control | Asynchronous FDR Control | FWER Control | How to get help for onlineFDR | Acknowledgements | References
Rendered fromonlineFDR.Rmdusingknitr::rmarkdown

Last update: 2022-08-25
Started: 2020-10-30