Package: pandaR 1.44.0

Joseph N. Paulson

pandaR: PANDA Algorithm

Runs PANDA, an algorithm for discovering novel network structure by combining information from multiple complementary data sources.

Authors:Dan Schlauch, Joseph N. Paulson, Albert Young, John Quackenbush, Kimberly Glass

pandaR_1.44.0.tar.gz
pandaR_1.44.0.zip(r-4.7)pandaR_1.44.0.zip(r-4.6)pandaR_1.44.0.zip(r-4.5)
pandaR_1.44.0.tgz(r-4.6-any)pandaR_1.44.0.tgz(r-4.5-any)
pandaR_1.44.0.tar.gz(r-4.7-any)pandaR_1.44.0.tar.gz(r-4.6-any)
pandaR_1.44.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
pandaR/json (API)

# Install 'pandaR' in R:
install.packages('pandaR', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • pandaResult - Analysis result from PANDA algorithm on toy data
  • pandaResultPairs - Analysis result from PANDA algorithm on toy data converted into pairs
  • pandaToyData - Toy gene expression, motif, and ppi data

On BioConductor:pandaR-1.45.0(bioc 3.24)pandaR-1.44.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

statisticalmethodgraphandnetworkmicroarraygeneregulationnetworkinferencegeneexpressiontranscriptionnetwork

3.30 score 8 scripts 452 downloads 1 mentions 14 exports 31 dependencies

Last updated from:6dafdc8115 (on RELEASE_3_23). Checks:2 ERROR, 7 WARNING, 1 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR157
linux-devel-x86_64WARNING180
source / vignettesERROR200
linux-release-x86_64WARNING213
macos-release-arm64WARNING120
macos-oldrel-arm64WARNING89
windows-develWARNING464
windows-releaseWARNING101
windows-oldrelWARNING514
wasm-releaseOK110

Exports:calcDegreecalcDegreeDifferenceimportPandaMatlabmultiplotpandaplotCommunityDetectionplotGraphplotZplotZbyTFsubnetworksummary.pandatargetedGenestestMotiftopedges

Dependencies:BiobaseBiocGenericsclicpp11farvergenericsggplot2gluegtablehexbinigraphisobandlabelinglatticelifecyclemagrittrMatrixmatrixStatspkgconfigplyrR6RColorBrewerRcppreshaperlangRUnitS7scalesvctrsviridisLitewithr

An Introduction to the pandaR Package

Daniel Schlauch, Albert Young, Joseph N. Paulson

Rendered frompandaR.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2016-05-01
Started: 2015-04-06