Package: partCNV
Type: Package
Title: Infer locally aneuploid cells using single cell RNA-seq data
Version: 1.10.0
Authors@R: c(
	person(given="Ziyi", family="Li", email="zli16@mdanderson.org", role=c("aut", "cre", "ctb")),
	person(given="Ruoxing", family="Li", email="ruoxingli@outlook.com", role="ctb"))
Description: This package uses a statistical framework for rapid and
        accurate detection of aneuploid cells with local copy number
        deletion or amplification. Our method uses an EM algorithm with
        mixtures of Poisson distributions while incorporating
        cytogenetics information (e.g., regional deletion or
        amplification) to guide the classification (partCNV). When
        applicable, we further improve the accuracy by integrating a
        Hidden Markov Model for feature selection (partCNVH).
Imports: stats, data.table, depmixS4, Seurat, SingleCellExperiment,
        AnnotationHub, magrittr, GenomicRanges, BiocStyle
Suggests: rmarkdown, knitr, IRanges, testthat (>= 3.0.0)
Dependents: R (>= 4.2.0)
VignetteBuilder: knitr
License: GPL-2
Encoding: UTF-8
RoxygenNote: 7.2.3
biocViews: Software, CopyNumberVariation, HiddenMarkovModel,
        SingleCell, Classification
Config/testthat/edition: 3
PackageStatus: Deprecated
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev python3 zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 13:00:57 UTC
RemoteUrl: https://github.com/bioc/partCNV
RemoteRef: RELEASE_3_23
RemoteSha: 089046f7fa27905e2fdda74486a1dc60f63e3963
NeedsCompilation: no
Packaged: 2026-07-09 05:41:48 UTC; root
Author: Ziyi Li [aut, cre, ctb],
  Ruoxing Li [ctb]
Maintainer: Ziyi Li <zli16@mdanderson.org>
Depends: R (>= 3.5.0)