Package: pasilla
Title: Data package with per-exon and per-gene read counts of RNA-seq
        samples of Pasilla knock-down by Brooks et al., Genome Research
        2011.
Version: 1.40.0
Author: Wolfgang Huber, Alejandro Reyes
Maintainer: Alejandro Reyes <alejandro.reyes.ds@gmail.com>
Description: This package provides per-exon and per-gene read counts
        computed for selected genes from RNA-seq data that were
        presented in the article "Conservation of an RNA regulatory map
        between Drosophila and mammals" by Brooks AN, Yang L, Duff MO,
        Hansen KD, Park JW, Dudoit S, Brenner SE, Graveley BR, Genome
        Res. 2011 Feb;21(2):193-202, Epub 2010 Oct 4, PMID: 20921232.
        The experiment studied the effect of RNAi knockdown of Pasilla,
        the Drosophila melanogaster ortholog of mammalian NOVA1 and
        NOVA2, on the transcriptome.  The package vignette describes
        how the data provided here were derived from the RNA-Seq read
        sequence data that are provided by NCBI Gene Expression Omnibus
        under accession numbers GSM461176 to GSM461181.
biocViews: ExperimentData, Genome, Drosophila_melanogaster_Data,
        RNASeqData
License: LGPL
Suggests: rmarkdown, BiocStyle, knitr, roxygen2
Depends: R (>= 3.5.0), DEXSeq
VignetteBuilder: knitr
RoxygenNote: 7.2.3
Encoding: UTF-8
Config/pak/sysreqs: libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:24:02 UTC
RemoteUrl: https://github.com/bioc/pasilla
RemoteRef: RELEASE_3_23
RemoteSha: df6e823536595a5ec277cc63fd263a0efb04161e
NeedsCompilation: no
Packaged: 2026-10-10 11:03:15 UTC; root