Package: pasillaBamSubset 0.50.0
Hervé Pagès
pasillaBamSubset: Subset of BAM files from "Pasilla" experiment
Subset of BAM files untreated1.bam (single-end reads) and untreated3.bam (paired-end reads) from "Pasilla" experiment (Pasilla knock-down by Brooks et al., Genome Research 2011). See the vignette in the pasilla data package for how BAM files untreated1.bam and untreated3.bam were obtained from the RNA-Seq read sequence data that is provided by NCBI Gene Expression Omnibus under accession numbers GSM461176 to GSM461181. Also contains the DNA sequence for fly chromosome 4 to which the reads can be mapped.
Authors:
pasillaBamSubset_0.50.0.tar.gz
pasillaBamSubset_0.50.0.tar.gz(r-4.7-any)pasillaBamSubset_0.50.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
pasillaBamSubset/json (API)
| # Install 'pasillaBamSubset' in R: |
| install.packages('pasillaBamSubset', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:pasillaBamSubset-0.51.0(data/experiment 3.24)pasillaBamSubset-0.50.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatagenomednaseqdatarnaseqdatadatapkg
Last updated from:6433d1d4d3 (on RELEASE_3_23). Checks:1 ERROR, 3 OK. Indexed: no.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 141 | ||
| linux-devel | OK | 204 | ||
| source / vignettes | OK | 200 | ||
| linux-release | OK | 292 |
Exports:dm3_chr4untreated1_chr4untreated3_chr4
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Utilities returning the paths to BAM files untreated1_chr4.bam and untreated3_chr4.bam | pasillaBamSubset-package dm3_chr4 pasillaBamSubset untreated1_chr4 untreated3_chr4 |