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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "peco" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'peco: A Supervised Approach for **P**r**e**dicting **c**ell Cycle Pr**o**gression
  using scRNA-seq data'
version: 1.24.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.peco
abstract: Our approach provides a way to assign continuous cell cycle phase using
  scRNA-seq data, and consequently, allows to identify cyclic trend of gene expression
  levels along the cell cycle. This package provides method and training data, which
  includes scRNA-seq data collected from 6 individual cell lines of induced pluripotent
  stem cells (iPSCs), and also continuous cell cycle phase derived from FUCCI fluorescence
  imaging data.
authors:
- family-names: Hsiao
  given-names: Chiaowen Joyce
  email: joyce.hsiao1@gmail.com
- family-names: Stephens
  given-names: Matthew
  email: stephens999@gmail.com
preferred-citation:
  type: unpublished
  title: Characterizing and inferring quantitative cell cycle phase in single-cell
    RNA-seq data analysis
  authors:
  - family-names: Hsiao
    given-names: Chiaowen Joyce
    email: joyce.hsiao1@gmail.com
  - family-names: Stephens
    given-names: Matthew
    email: stephens999@gmail.com
  journal: bioRxiv
  notes: 10.1101/526848
  year: '2019'
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/jhsiao999/peco
commit: 25567acd69efa569aecc960c866dcf2e17f7a43e
url: https://github.com/jhsiao999/peco
date-released: '2026-04-28'
contact:
- family-names: Hsiao
  given-names: Chiaowen Joyce
  email: joyce.hsiao1@gmail.com