# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "pgxRpi" in publications use:'
type: software
license: Artistic-2.0
title: 'pgxRpi: R wrapper for Progenetix'
version: 1.8.0
doi: 10.1093/bioadv/vbaf172
identifiers:
- type: doi
  value: 10.32614/CRAN.package.pgxRpi
abstract: The package is an R wrapper for Progenetix REST API built upon the Beacon
  v2 protocol. Its purpose is to provide a seamless way for retrieving genomic data
  from Progenetix database—an open resource dedicated to curated oncogenomic profiles.
  Empowered by this package, users can effortlessly access and visualize data from
  Progenetix.
authors:
- family-names: Zhao
  given-names: Hangjia
  email: hangjia.zhao@uzh.ch
  orcid: https://orcid.org/0000-0001-8376-5751
- family-names: Baudis
  given-names: Michael
  email: michael.baudis@mls.uzh.ch
  orcid: https://orcid.org/0000-0002-9903-4248
preferred-citation:
  type: article
  title: 'pgxRpi: an R/bioconductor package for user-friendly access to the Beacon
    v2 API'
  authors:
  - family-names: Zhao
    given-names: Hangjia
    email: hangjia.zhao@uzh.ch
    orcid: https://orcid.org/0000-0001-8376-5751
  - family-names: Baudis
    given-names: Michael
    email: michael.baudis@mls.uzh.ch
    orcid: https://orcid.org/0000-0002-9903-4248
  journal: Bioinformatics Advances
  year: '2025'
  volume: '5'
  issue: '1'
  doi: 10.1093/bioadv/vbaf172
  url: https://doi.org/10.1093/bioadv/vbaf172
  start: vbaf172
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/progenetix/pgxRpi
commit: 0f8693294a94da5374b23e8a92246b65088cfe6c
url: https://github.com/progenetix/pgxRpi
date-released: '2026-04-28'
contact:
- family-names: Zhao
  given-names: Hangjia
  email: hangjia.zhao@uzh.ch
  orcid: https://orcid.org/0000-0001-8376-5751