# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "phyloseq" in publications use:'
type: software
license: AGPL-3.0-only
title: 'phyloseq: Handling and analysis of high-throughput microbiome census data'
version: 1.56.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.phyloseq
abstract: phyloseq provides a set of classes and tools to facilitate the import, storage,
  analysis, and graphical display of microbiome census data.
authors:
- family-names: McMurdie
  given-names: Paul J.
  email: joey711@gmail.com
- family-names: Holmes
  given-names: Susan
  email: susan@stat.stanford.edu
preferred-citation:
  type: article
  title: 'phyloseq: An R package for reproducible interactive analysis and graphics
    of microbiome census data'
  authors:
  - family-names: McMurdie
    given-names: Paul J.
    email: joey711@gmail.com
  - family-names: Holmes
    given-names: Susan
    email: susan@stat.stanford.edu
  journal: PLoS ONE
  volume: '8'
  issue: '4'
  year: '2013'
  url: http://dx.plos.org/10.1371/journal.pone.0061217
  start: e61217
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/joey711/phyloseq
commit: 2613cac91c7e1642bbfc66bae9dd1392db1c7130
url: http://dx.plos.org/10.1371/journal.pone.0061217
date-released: '2026-02-27'
contact:
- family-names: McMurdie
  given-names: Paul J.
  email: joey711@gmail.com