Package: planttfhunter
Title: Identification and classification of plant transcription factors
Version: 1.12.0
Date: 2022-03-10
Authors@R: 
    c(
    person(given = "Fabrício",
           family = "Almeida-Silva",
           role = c("aut", "cre"),
           email = "fabricio_almeidasilva@hotmail.com",
           comment = c(ORCID = "0000-0002-5314-2964")),
    person(given = "Yves",
           family = "Van de Peer",
           role = "aut",
           email = "yves.vandepeer@psb.vib-ugent.be",
           comment = c(ORCID = "0000-0003-4327-3730"))
    )
Description: planttfhunter is used to identify plant transcription
        factors (TFs) from protein sequence data and classify them into
        families and subfamilies using the classification scheme
        implemented in PlantTFDB. TFs are identified using pre-built
        hidden Markov model profiles for DNA-binding domains. Then,
        auxiliary and forbidden domains are used with DNA-binding
        domains to classify TFs into families and subfamilies (when
        applicable). Currently, TFs can be classified in 58 different
        TF families/subfamilies.
License: GPL-3
URL: https://github.com/almeidasilvaf/planttfhunter
BugReports: https://support.bioconductor.org/t/planttfhunter
biocViews: Software, Transcription, FunctionalPrediction,
        GenomeAnnotation, FunctionalGenomics, HiddenMarkovModel,
        Sequencing, Classification
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.1
SystemRequirements: HMMER <http://hmmer.org/>
Imports: Biostrings, SummarizedExperiment, utils, methods
Suggests: BiocStyle, covr, sessioninfo, knitr, rmarkdown, testthat (>=
        3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
Depends: R (>= 4.2.0)
LazyData: false
Config/pak/sysreqs: zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:59:30 UTC
RemoteUrl: https://github.com/bioc/planttfhunter
RemoteRef: RELEASE_3_23
RemoteSha: 677b1c7304627ec821cab57f6d1eed7ca10f1be3
NeedsCompilation: no
Packaged: 2026-07-05 00:25:51 UTC; root
Author: Fabrício Almeida-Silva [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-5314-2964>),
  Yves Van de Peer [aut] (ORCID: <https://orcid.org/0000-0003-4327-3730>)
Maintainer: Fabrício Almeida-Silva <fabricio_almeidasilva@hotmail.com>