Changes in version 1.41.1 o updated DESCRIPTION file to new format (Authors@R) Changes in version 1.41.0 o new branch for Bioconductor 3.22 devel Changes in version 1.40.0 o release as part of Bioconductor 3.21 Changes in version 1.39.0 o new branch for Bioconductor 3.21 devel Changes in version 1.38.0 o release as part of Bioconductor 3.20 Changes in version 1.37.0 o new branch for Bioconductor 3.20 devel Changes in version 1.36.0 o release as part of Bioconductor 3.19 Changes in version 1.35.1 o changed e-mail address of maintainer o updated README.md and formatting of package vignette o updated CITATION o updated references in documentation Changes in version 1.35.0 o new branch for Bioconductor 3.19 devel Changes in version 1.34.0 o release as part of Bioconductor 3.18 Changes in version 1.33.0 o new branch for Bioconductor 3.18 devel Changes in version 1.32.0 o release as part of Bioconductor 3.17 Changes in version 1.31.1 o changed arguments in qqplot() method for compatibility with new version of the standard function in the 'stats' package (added dummy arguments to avoid errors) o minor adaptations of help pages Changes in version 1.31.0 o new branch for Bioconductor 3.17 devel Changes in version 1.30.0 o release as part of Bioconductor 3.16 Changes in version 1.29.0 o new branch for Bioconductor 3.16 devel Changes in version 1.28.0 o release as part of Bioconductor 3.15 Changes in version 1.27.0 o new branch for Bioconductor 3.15 devel Changes in version 1.26.0 o release as part of Bioconductor 3.14 Changes in version 1.25.1 o adjusted NAMESPACE to account for changes in BiocGenerics package Changes in version 1.25.0 o new branch for Bioconductor 3.14 devel Changes in version 1.24.0 o release as part of Bioconductor 3.13 Changes in version 1.23.2 o updates and documentation to vignette in order to adapt to newer version of Illumina's TruSeq DNA Exome library prep kit o changed default col.names in readRegionsFromBedFile(); corresponding update of help page Changes in version 1.23.1 o re-created genome data objects (old data objects had become incompatible with newer 'BSgenome' version) Changes in version 1.23.0 o new branch for Bioconductor 3.13 devel Changes in version 1.22.0 o release as part of Bioconductor 3.12 Changes in version 1.21.0 o new branch for Bioconductor 3.12 devel Changes in version 1.20.0 o release as part of Bioconductor 3.11 Changes in version 1.19.1 o fix in nullModel() method to ensure compatibility with R 4.0 Changes in version 1.19.0 o new branch for Bioconductor 3.11 devel Changes in version 1.18.0 o release as part of Bioconductor 3.10 Changes in version 1.17.3 o removed change history from package vignette for easier maintenance Changes in version 1.17.2 o minor changes to DESCRIPTION file (system requirement GNU make) and src/Makevars Changes in version 1.17.1 o changed summary() method for VariantAnnotation class in order to stay compatible with print() method in GenomicRanges package o corresponding minor adaptations in documentation and package vignette Changes in version 1.17.0 o new branch for Bioconductor 3.10 devel Changes in version 1.16.0 o release as part of Bioconductor 3.9 Changes in version 1.15.1 o changed Rsamtools API to Rhtslib API Changes in version 1.15.0 o new branch for Bioconductor 3.9 devel Changes in version 1.14.0 o release as part of Bioconductor 3.8 Changes in version 1.13.0 o new branch for Bioconductor 3.8 devel Changes in version 1.12.0 o release as part of Bioconductor 3.7 Changes in version 1.11.0 o new branch for Bioconductor 3.7 devel Changes in version 1.10.0 o release as part of Bioconductor 3.6 Changes in version 1.9.0 o new branch for Bioconductor 3.6 devel Changes in version 1.8.0 o release as part of Bioconductor 3.5 Changes in version 1.7.0 o new branch for Bioconductor 3.5 devel Changes in version 1.6.0 o release as part of Bioconductor 3.4 Changes in version 1.5.4 o fix in vignette code that became necessary because of a change in the hg38 transcript annotation Changes in version 1.5.3 o readRegionsFromBedFile() now allows for including metadata columns o corresponding changes in documentation o fix of call to method rowRanges() into suggested package o fix of citation info file o fix of inst/NEWS Changes in version 1.5.2 o version number bump for technical reasons related to Bioconductor build servers Changes in version 1.5.1 o version number bump for technical reasons related to Bioconductor build servers Changes in version 1.5.0 o new branch for Bioconductor 3.4 devel Changes in version 1.4.0 o release as part of Bioconductor 3.3 Changes in version 1.3.1 o added missing method readVariantInfo() for signature 'character', 'GRanges' o minor streamlining of source code of readGenotypeMatrix() o corrections of namespace imports Changes in version 1.3.0 o new branch for Bioconductor 3.3 devel Changes in version 1.2.0 o release as part of Bioconductor 3.2 Changes in version 1.1.3 o further fix of weights() method for signature 'AssocTestResultRanges' Changes in version 1.1.2 o fix of weights() method for signature 'AssocTestResultRanges' Changes in version 1.1.1 o fix of filterResults() method for signature 'GRanges' Changes in version 1.1.0 o new branch for Bioconductor 3.2 devel Changes in version 1.0.0 o first official release as part of Bioconductor 3.1