Package: pogos 1.32.0
VJ Carey
pogos: PharmacOGenomics Ontology Support
Provide simple utilities for querying bhklab PharmacoDB, modeling API outputs, and integrating to cell and compound ontologies.
Authors:
pogos_1.32.0.tar.gz
pogos_1.32.0.zip(r-4.7)pogos_1.32.0.zip(r-4.6)pogos_1.32.0.zip(r-4.5)
pogos_1.32.0.tgz(r-4.6-any)pogos_1.32.0.tgz(r-4.5-any)
pogos_1.32.0.tar.gz(r-4.7-any)pogos_1.32.0.tar.gz(r-4.6-any)
pogos_1.32.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
pogos/json (API)
| # Install 'pogos' in R: |
| install.packages('pogos', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
- CCLE_drts - Compounds_v1: serialization of compounds info from PharmacoDb v1
- cell_lines_v1 - Compounds_v1: serialization of compounds info from PharmacoDb v1
- compounds_v1 - Compounds_v1: serialization of compounds info from PharmacoDb v1
- datasets_v1 - Compounds_v1: serialization of compounds info from PharmacoDb v1
- tissues_v1 - Compounds_v1: serialization of compounds info from PharmacoDb v1
On BioConductor:pogos-1.33.0(bioc 3.24)pogos-1.32.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
pharmacogenomicspooledscreensimmunooncology
Last updated from:9d176a25a7 (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 193 | ||
| linux-devel-x86_64 | NOTE | 423 | ||
| source / vignettes | OK | 540 | ||
| linux-release-x86_64 | NOTE | 365 | ||
| macos-release-arm64 | NOTE | 189 | ||
| macos-oldrel-arm64 | NOTE | 185 | ||
| windows-devel | NOTE | 303 | ||
| windows-release | NOTE | 295 | ||
| windows-oldrel | NOTE | 270 | ||
| wasm-release | OK | 163 |
Exports:basicDecodercompoundsByCellDRProfSetDRTraceSetgetDrugsiriCCLEplotrxdbQuery_v1topEndpoints_v1traces
Dependencies:abindAnnotationDbiAnnotationHubaskpassbase64encbasiliskBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobbslibcachemclicommonmarkcorocpp11crayoncrosstalkcurlDBIdbplyrDelayedArraydigestdir.expirydplyrDTellmerevaluatefarverfastmapfilelockfontawesomefsgenericsGenomicRangesggplot2gluegraphgtableherehighrhtmltoolshtmlwidgetshttpuvhttrhttr2igraphIRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglaterlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeontologyIndexontologyPlotontoProcopensslotelpaintmappillarpkgconfigpngpromisespurrrR.methodsS3R.ooR.utilsR6rappdirsRBGLRColorBrewerRcppRcppTOMLreticulateRgraphvizrjsonrlangrmarkdownrprojrootRSQLiteS4ArraysS4VectorsS7sassscalesSeqinfoshinysourcetoolsSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableXVectoryaml
