# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "pqsfinder" in publications use:'
type: software
license: BSD-2-Clause
title: 'pqsfinder: Identification of potential quadruplex forming sequences'
version: 2.28.0
doi: 10.1093/bioinformatics/btx413
identifiers:
- type: doi
  value: 10.32614/CRAN.package.pqsfinder
abstract: Pqsfinder detects DNA and RNA sequence patterns that are likely to fold
  into an intramolecular G-quadruplex (G4). Unlike many other approaches, pqsfinder
  is able to detect G4s folded from imperfect G-runs containing bulges or mismatches
  or G4s having long loops. Pqsfinder also assigns an integer score to each hit that
  was fitted on G4 sequencing data and corresponds to expected stability of the folded
  G4.
authors:
- family-names: Hon
  given-names: Jiri
  email: jiri.hon@gmail.com
- family-names: Labudova
  given-names: Dominika
  email: d.labudova@gmail.com
- family-names: Martinek
  given-names: Tomas
  email: martinto@fit.vutbr.cz
- family-names: Lexa
  given-names: Matej
  email: lexa@fi.muni.cz
preferred-citation:
  type: article
  title: 'pqsfinder: an exhaustive and imperfection-tolerant search tool for potential
    quadruplex-forming sequences in R'
  authors:
  - family-names: Hon
    given-names: Jiri
    email: jiri.hon@gmail.com
  - family-names: Martinek
    given-names: Tomas
    email: martinto@fit.vutbr.cz
  - family-names: Zendulka
    given-names: Jaroslav
  - family-names: Lexa
    given-names: Matej
    email: lexa@fi.muni.cz
  doi: 10.1093/bioinformatics/btx413
  journal: Bioinformatics
  year: '2017'
  volume: '33'
  issue: '21'
  start: 3373-3379
repository: https://bioc-release.r-universe.dev
commit: 253c557dc8092150ec840f5936d0de1fc7ea4996
url: https://pqsfinder.fi.muni.cz
date-released: '2021-11-21'
contact:
- family-names: Hon
  given-names: Jiri
  email: jiri.hon@gmail.com