# ------------------------------------------------
# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# ------------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "prebsdata" in publications use:'
type: software
license: Artistic-2.0
title: 'prebsdata: Data for ''prebs'' package'
version: 1.48.0
doi: 10.1093/nar/gni179
identifiers:
- type: doi
  value: 10.32614/CRAN.package.prebsdata
abstract: 'This package contains data required to run examples in ''prebs'' package.
  The data files include: 1) Small sample bam files for demonstration purposes 2)
  Probe sequence mappings for Custom CDF (taken from http://brainarray.mbni.med.umich.edu/brainarray/Database/CustomCDF/genomic_curated_CDF.asp)
  3) Probe sequence mappings for manufacturer''s CDF (manually created using bowtie)'
authors:
- family-names: Uziela
  given-names: Karolis
  email: karolis.uziela@scilifelab.se
- family-names: Honkela
  given-names: Antti
preferred-citation:
  type: article
  title: Evolving gene/transcript definitions significantly alter the interpretation
    of GeneChip data.
  authors:
  - family-names: Dai
    given-names: Manhong
  - family-names: Wang
    given-names: Pinglang
  - family-names: Boyd
    given-names: Andrew D
  - family-names: Kostov
    given-names: Georgi
  - family-names: Athey
    given-names: Brian
  - family-names: Jones
    given-names: Edward G
  - family-names: Bunney
    given-names: William E
  - family-names: Myers
    given-names: Richard M
  - family-names: Speed
    given-names: Terry P
  - family-names: Akil
    given-names: Huda
  - family-names: Watson
    given-names: Stanley J
  - family-names: Meng
    given-names: Fan
  journal: Nucleic Acids Research
  year: '2005'
  volume: '33'
  issue: '20'
  url: http://dx.doi.org/10.1093/nar/gni179
  start: e175
  doi: 10.1093/nar/gni179
repository: https://bioconductor.org/
commit: 45cc83bcac2fc88f569b496a0f9059a84f7b604e
date-released: '2026-04-28'
contact:
- family-names: Uziela
  given-names: Karolis
  email: karolis.uziela@scilifelab.se
references:
- type: article
  title: 'RNA-seq: an assessment of technical reproducibility and comparison with
    gene expression arrays.'
  authors:
  - family-names: Marioni
    given-names: John C
  - family-names: Mason
    given-names: Christopher E
  - family-names: Mane
    given-names: Shrikant M
  - family-names: Stephens
    given-names: Matthew
  - family-names: Gilad
    given-names: Yoav
  journal: Genome Research
  year: '2008'
  volume: '18'
  issue: '9'
  url: http://dx.doi.org/10.1101/gr.079558.108
  start: 1509-1517
  doi: 10.1101/gr.079558.108