Package: proBAMr
Type: Package
Title: Generating SAM file for PSMs in shotgun proteomics data
Version: 1.46.0
Date: 2025-04-30
Author: Xiaojing Wang
Maintainer: Xiaojing Wang <xiaojing.wang@vanderbilt.edu>
Description: Mapping PSMs back to genome. The package builds SAM file
        from shotgun proteomics data The package also provides function
        to prepare annotation from GTF file.
License: Artistic-2.0
Depends: R (>= 3.0.1), IRanges, AnnotationDbi
Imports: GenomicRanges, Biostrings, GenomicFeatures, txdbmaker,
        rtracklayer
Suggests: GenomeInfoDbData, RUnit, BiocGenerics
biocViews: ImmunoOncology, Proteomics, MassSpectrometry, Software,
        Visualization
NeedsCompilation: no
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:39:54 UTC
RemoteUrl: https://github.com/bioc/proBAMr
RemoteRef: RELEASE_3_23
RemoteSha: 3363cd6c575f19e228adf7b4f62966d415d0bee4
Packaged: 2026-10-01 11:03:08 UTC; root