Package: qPLEXanalyzer 1.30.0
Ashley Sawle
qPLEXanalyzer: Tools for quantitative proteomics data analysis
Tools for TMT based quantitative proteomics data analysis.
Authors:
qPLEXanalyzer_1.30.0.tar.gz
qPLEXanalyzer_1.30.0.zip(r-4.7)qPLEXanalyzer_1.30.0.zip(r-4.6)qPLEXanalyzer_1.30.0.zip(r-4.5)
qPLEXanalyzer_1.30.0.tgz(r-4.6-any)qPLEXanalyzer_1.30.0.tgz(r-4.5-any)
qPLEXanalyzer_1.30.0.tar.gz(r-4.7-any)qPLEXanalyzer_1.30.0.tar.gz(r-4.6-any)
qPLEXanalyzer_1.30.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
qPLEXanalyzer/json (API)
NEWS
| # Install 'qPLEXanalyzer' in R: |
| install.packages('qPLEXanalyzer', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/crukci-bioinformatics/qplexanalyzer/issues
- ER_ARID1A_KO_MCF7 - ER_ARID1A_KO_MCF7 dataset
- exp2_Xlink - Exp2_Xlink dataset
- exp3_OHT_ESR1 - Exp3_OHT_ESR1 dataset
- human_anno - Human_anno dataset
- mouse_anno - Mouse_anno dataset
On BioConductor:qPLEXanalyzer-1.31.0(bioc 3.24)qPLEXanalyzer-1.30.0(bioc 3.23)
immunooncologyproteomicsmassspectrometrynormalizationpreprocessingqualitycontroldataimport
Last updated from:b900e605ed (on RELEASE_3_23). Checks:8 NOTE, 2 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 223 | ||
| linux-devel-x86_64 | NOTE | 457 | ||
| source / vignettes | OK | 380 | ||
| linux-release-x86_64 | NOTE | 443 | ||
| macos-release-arm64 | NOTE | 256 | ||
| macos-oldrel-arm64 | NOTE | 229 | ||
| windows-devel | NOTE | 348 | ||
| windows-release | NOTE | 323 | ||
| windows-oldrel | NOTE | 367 | ||
| wasm-release | OK | 179 |
Exports:assignColourscoefVarcomputeDiffStatsconvertToMSnsetcorrPlotcoveragePlotgetContrastResultsgroupScalinghierarchicalPlotintensityBoxplotintensityPlotIRSnormmaVolPlotmergePeptidesmergeSitesnormalizeQuantilesnormalizeScalingpcaPlotpeptideIntensityPlotplotMeanVarregressIntensityrliPlotrowScalingsummarizeIntensities
Dependencies:abindaffyaffyioAnnotationFilteraskpassassertthatbase64encBHBiobaseBiocBaseUtilsBiocGenericsbiocmakeBiocManagerBiocParallelBiostringsbitbit64bslibcachemclicliprclueclustercodetoolscpp11crayoncrosstalkcurldata.tableDelayedArraydigestdir.expirydoParalleldplyrevaluatefarverfastmapfilelockfontawesomeforeachformatRfsfutile.loggerfutile.optionsgenericsGenomicRangesggdendroggplot2gluegtablehighrhmshtmltoolshtmlwidgetshttrigraphimputeIRangesisobanditeratorsjquerylibjsonliteknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmamagrittrMALDIquantMASSMatrixMatrixGenericsmatrixStatsmemoiseMetaboCoreUtilsmimeMsCoreUtilsMSnbaseMultiAssayExperimentmzIDmzRncdf4opensslotelpcaMethodspillarpkgconfigplotlyplyrpreprocessCoreprettyunitsprogresspromisesProtGenericsPSMatchPTModspurrrQFeaturesR6rappdirsRColorBrewerRcppreadrreshape2Rhdf5librlangrmarkdownS4ArraysS4VectorsS7sassscalesSeqinfosnowSparseArraySpectrastatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytextzdbutf8vctrsviridisLitevroomvsnwithrxfunXMLXVectoryaml
