Package: qsvaR
Title: Generate Quality Surrogate Variable Analysis for Degradation
        Correction
Version: 1.16.0
Date: 2025-09-29
Authors@R: 
    c(
    person("Joshua", "Stolz", email = "jstolz80@gmail.com",
        role = c("aut"),
        comment = c(ORCID = "0000-0001-5694-5247")),
	person("Hedia", "Tnani", email = "hediatnani0@gmail.com",
	    role = c("ctb"),
	    comment = c(ORCID = "0000-0002-0380-9740")),
    person("Leonardo", "Collado-Torres", role = c("ctb"),
    email = "lcolladotor@gmail.com", comment = c(ORCID = "0000-0003-2140-308X")),
    person("Nicholas J.", "Eagles", email = "nickeagles77@gmail.com",
    role = c("aut", "cre"), comment = c(ORCID = "0000-0002-9808-5254"))
    )
Description: The qsvaR package contains functions for removing the
        effect of degration in rna-seq data from postmortem brain
        tissue. The package is equipped to help users generate
        principal components associated with degradation. The
        components can be used in differential expression analysis to
        remove the effects of degradation.
License: Artistic-2.0
URL: https://github.com/LieberInstitute/qsvaR
BugReports: https://support.bioconductor.org/t/qsvaR
biocViews: Software, WorkflowStep, Normalization, BiologicalQuestion,
        DifferentialExpression, Sequencing, Coverage
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Suggests: BiocFileCache, BiocStyle, covr, knitr, limma, RefManageR,
        rmarkdown, sessioninfo, testthat (>= 3.0.0)
Config/testthat/edition: 3
Imports: dplyr, sva, stats, ggplot2, rlang, methods
Depends: R (>= 4.2), SummarizedExperiment
LazyData: true
VignetteBuilder: knitr
Config/pak/sysreqs: libpng-dev libxml2-dev libssl-dev zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:58:04 UTC
RemoteUrl: https://github.com/bioc/qsvaR
RemoteRef: RELEASE_3_23
RemoteSha: a2ac40ec7b829d42c0a58c91ccfd00aa43b54963
NeedsCompilation: no
Packaged: 2026-09-23 08:30:00 UTC; root
Author: Joshua Stolz [aut] (ORCID: <https://orcid.org/0000-0001-5694-5247>),
  Hedia Tnani [ctb] (ORCID: <https://orcid.org/0000-0002-0380-9740>),
  Leonardo Collado-Torres [ctb] (ORCID:
    <https://orcid.org/0000-0003-2140-308X>),
  Nicholas J. Eagles [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-9808-5254>)
Maintainer: Nicholas J. Eagles <nickeagles77@gmail.com>