Package: qvalue Type: Package Title: Q-value estimation for false discovery rate control Version: 2.44.0 Date: 2015-03-24 Authors@R: c( person(given = "John D.", family = "Storey", email = "jdstorey@princeton.edu", role = c("aut", "cre")), person(given = "Andrew J.", family = "Bass", email = "ajbass@emory.edu", role = "aut"), person(given = "Alan", family = "Dabney", role = "aut"), person(given = "David", family = "Robinson", role = "aut"), person(given = "Gregory", family = "Warnes", role = "ctb")) Maintainer: John D. Storey , Andrew J. Bass biocViews: MultipleComparisons Description: This package takes a list of p-values resulting from the simultaneous testing of many hypotheses and estimates their q-values and local FDR values. The q-value of a test measures the proportion of false positives incurred (called the false discovery rate) when that particular test is called significant. The local FDR measures the posterior probability the null hypothesis is true given the test's p-value. Various plots are automatically generated, allowing one to make sensible significance cut-offs. Several mathematical results have recently been shown on the conservative accuracy of the estimated q-values from this software. The software can be applied to problems in genomics, brain imaging, astrophysics, and data mining. VignetteBuilder: knitr Imports: splines, ggplot2, grid, reshape2 Suggests: knitr Depends: R(>= 2.10) URL: http://github.com/jdstorey/qvalue License: LGPL RoxygenNote: 5.0.1 Config/pak/sysreqs: libicu-dev Repository: Bioconductor 3.23 Date/Publication: 2026-04-28 12:30:26 UTC RemoteUrl: https://github.com/bioc/qvalue RemoteRef: RELEASE_3_23 RemoteSha: ce7605b2dcfd5089cf571b9324778fa75f0ef0a8 NeedsCompilation: no Packaged: 2026-09-24 08:35:35 UTC; root Author: John D. Storey [aut, cre], Andrew J. Bass [aut], Alan Dabney [aut], David Robinson [aut], Gregory Warnes [ctb]