Package: rSWeeP 1.24.0

Camila P Perico

rSWeeP: Spaced Words Projection (SWeeP)

"Spaced Words Projection (SWeeP)" is a method for representing biological sequences using vectors preserving inter-sequence comparability.

Authors:Camila Pereira Perico [com, cre, aut, cph], Danrley Rafael Fernandes [aut], Mariane Gonçalves Kulik [aut], Júlia Formighieri Varaschin [aut], Camilla Reginatto de Pierri [aut], Ricardo Assunção Vialle [aut], Roberto Tadeu Raittz [aut, cph]

rSWeeP_1.24.0.tar.gz
rSWeeP_1.24.0.zip(r-4.7)rSWeeP_1.24.0.zip(r-4.6)rSWeeP_1.24.0.zip(r-4.5)
rSWeeP_1.24.0.tgz(r-4.6-any)rSWeeP_1.24.0.tgz(r-4.5-any)
rSWeeP_1.24.0.tar.gz(r-4.7-any)rSWeeP_1.24.0.tar.gz(r-4.6-any)
rSWeeP_1.24.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
rSWeeP/json (API)
NEWS

# Install 'rSWeeP' in R:
install.packages('rSWeeP', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:rSWeeP-1.25.0(bioc 3.24)rSWeeP-1.24.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

4.00 score 3 scripts 324 downloads 6 exports 13 dependencies

Last updated from:ca26a73028 (on RELEASE_3_23). Checks:1 ERROR, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR192
linux-devel-x86_64OK275
source / vignettesOK233
linux-release-x86_64OK409
macos-release-arm64OK187
macos-oldrel-arm64OK189
windows-develOK157
windows-releaseOK176
windows-oldrelOK156
wasm-releaseOK154

Exports:extractHDVorthBasePCCIPMPGSWeePSWeePlite

Dependencies:BiocGenericsBiostringscodetoolscrayondoParallelforeachgenericsIRangesiteratorsS4VectorsSeqinfostringiXVector

rSWeeP: Alignment-free method for vectorising biological sequences

Camila Pereira Perico, Danrley Rafael Fernandes, Julia Formighieri Varaschin, Camilla Reginatto De Pierri, Mariane Gonçalves Kulik, Ricardo Assunção Vialle, Roberto Tadeu Raittz

Rendered fromrSWeeP.Rmdusingknitr::rmarkdownon Jun 15 2026.

Last update: 2024-08-17
Started: 2019-06-25

Readme and manuals

Help Manual

Help pageTopics
rSWeeP - Alignment-free method for vectorising biological sequencesrSWeeP-package rSWeeP
Function for obtaining the HDV (High Dimensional Vector) matrixextractHDV extractHDV,AAStringSet-method extractHDV,BString-method extractHDV,BStringSet-method extractHDV,character-method extractHDV,DNAStringSet-method extractHDV,RNAStringSet-method
Generate a orthonormal matrixorthBase
PhyloTaxonomic Consistency Cophenetic IndexPCCI
Percentage of Mono or Paraphyletic GroupsPMPG
Spaced Words ProjectionSWeeP SWeeP,AAStringSet-method SWeeP,array-method SWeeP,BString-method SWeeP,BStringSet-method SWeeP,character-method SWeeP,dgCMatrix-method SWeeP,DNAStringSet-method SWeeP,integer-method SWeeP,matrix-method SWeeP,RNAStringSet-method
Spaced Words Projection liteSWeePlite SWeePlite,AAStringSet-method SWeePlite,array-method SWeePlite,BString-method SWeePlite,BStringSet-method SWeePlite,character-method SWeePlite,dgCMatrix-method SWeePlite,DNAStringSet-method SWeePlite,integer-method SWeePlite,matrix-method SWeePlite,RNAStringSet-method