Package: raerdata 1.10.0

Kent Riemondy

raerdata: A collection of datasets for use with raer package

raerdata is an ExperimentHub package that provides a collection of files useful for demostrating functionality in the raer package. Datasets include 10x genomics scRNA-seq, bulk RNA-seq, and paired whole-genome and RNA-seq data. Additionally databases of human and mouse RNA editing sites are provided.

Authors:Kent Riemondy [aut, cre]

raerdata_1.10.0.tar.gz
raerdata_1.10.0.tar.gz(r-4.7-any)raerdata_1.10.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
raerdata/json (API)

# Install 'raerdata' in R:

install.packages('raerdata', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rnabioco/raerdata/issues

On BioConductor:raerdata-1.11.0(data/experiment 3.24)raerdata-1.10.0(data/experiment 3.23)

singlecelldata sequencingdata rnaseqdata experimenthub packagetypedata expressiondata datapkg

3.30 score 4 scripts 9 exports 87 dependencies

Last updated from:91f3e75bc6 (on RELEASE_3_23). Checks:3 NOTE, 1 OK. Indexed: no.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	NOTE	171
linux-devel	NOTE	407
source / vignettes	OK	313
linux-release	NOTE	423

Exports:gabay_sites_hg38 gabay_sites_mm10 GSE99249 NA12878 pbmc_10x rediportal_coords_hg38 rediportal_coords_mm10 rediportal_full_hg38 rediportal_full_mm10

Dependencies:abind AnnotationDbi AnnotationHub askpass BH Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocIO BiocManager BiocParallel BiocVersion Biostrings bit bit64 bitops blob cachem cigarillo cli codetools cpp11 crayon curl DBI dbplyr DelayedArray dplyr ExperimentHub fastmap filelock formatR futile.logger futile.options generics GenomicAlignments GenomicRanges glue httr httr2 IRanges jsonlite KEGGREST lambda.r lattice lifecycle magrittr Matrix MatrixGenerics matrixStats memoise mime openssl pillar pkgconfig png purrr R6 rappdirs RCurl restfulr Rhtslib rjson rlang Rsamtools RSQLite rtracklayer S4Arrays S4Vectors Seqinfo SingleCellExperiment snow SparseArray stringi stringr SummarizedExperiment sys tibble tidyr tidyselect utf8 vctrs withr XML XVector yaml

raerdata: datasets and databases for use with the raer package

Rendered fromraerdata.Rmdusingknitr::rmarkdown

Last update: 2023-10-12
Started: 2023-06-21

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
RNA sequencing data from study GSE99249	GSE99249
Whole genome and RNA sequencing data from NA12878 cell line	NA12878
single cell RNA sequencing data from human PBMCs	pbmc_10x
raerdata	raerdata
Databases of known RNA editing sites	gabay_sites_hg38 gabay_sites_mm10 rediportal_coords_hg38 rediportal_coords_mm10 rediportal_full_hg38 rediportal_full_mm10