# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "ramr" in publications use:'
type: software
license: Artistic-2.0
title: 'ramr: Detection of Rare Aberrantly Methylated Regions in Array and NGS Data'
version: 1.20.0
doi: 10.1093/bioinformatics/btab586
identifiers:
- type: doi
  value: 10.32614/CRAN.package.ramr
abstract: ramr is an R package for detection of epimutations (i.e., infrequent aberrant
  DNA methylation events) in large data sets obtained by methylation profiling using
  array or high-throughput methylation sequencing. In addition, package provides functions
  to visualize found aberrantly methylated regions (AMRs), to generate sets of all
  possible regions to be used as reference sets for enrichment analysis, and to generate
  biologically relevant test data sets for performance evaluation of AMR/DMR search
  algorithms.
authors:
- family-names: Nikolaienko
  given-names: Oleksii
  email: oleksii.nikolaienko@gmail.com
  orcid: https://orcid.org/0000-0002-5910-4934
preferred-citation:
  type: article
  title: 'ramr: an R/Bioconductor package for detection of rare aberrantly methylated
    regions'
  authors:
  - family-names: Nikolaienko
    given-names: Oleksii
    email: oleksii.nikolaienko@gmail.com
    orcid: https://orcid.org/0000-0002-5910-4934
  - family-names: Lønning
    given-names: Per Eystein
  - family-names: Knappskog
    given-names: Stian
  journal: Bioinformatics
  year: '2021'
  url: https://doi.org/10.1093/bioinformatics/btab586
  doi: 10.1093/bioinformatics/btab586
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/BBCG/ramr
commit: 0e5de4b9d949b1124f89746cabf452b4eb85e295
url: https://github.com/BBCG/ramr
date-released: '2026-04-28'
contact:
- family-names: Nikolaienko
  given-names: Oleksii
  email: oleksii.nikolaienko@gmail.com
  orcid: https://orcid.org/0000-0002-5910-4934