Package: reconsi
Type: Package
Title: Resampling Collapsed Null Distributions for Simultaneous
        Inference
Version: 1.24.0
Authors@R: 
    c(person(given = "Stijn", family = "Hawinkel", 
    email = "stijn.hawinkel@psb.ugent.be", 
    role=c("cre", "aut"), comment = c(ORCID = "0000-0002-4501-5180")))
Description: Improves simultaneous inference under dependence of tests
        by estimating a collapsed null distribution through resampling.
        Accounting for the dependence between tests increases the power
        while reducing the variability of the false discovery
        proportion. This dependence is common in genomics applications,
        e.g. when combining flow cytometry measurements with microbiome
        sequence counts.
License: GPL-2
Encoding: UTF-8
RoxygenNote: 7.2.1
Imports: phyloseq, ks, reshape2, ggplot2, stats, methods, graphics,
        grDevices, matrixStats, Matrix
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
biocViews: Metagenomics, Microbiome, MultipleComparison, FlowCytometry
BugReports: https://github.com/CenterForStatistics-UGent/reconsi/issues
LazyData: true
Config/pak/sysreqs: libglpk-dev libicu-dev libxml2-dev zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:51:41 UTC
RemoteUrl: https://github.com/bioc/reconsi
RemoteRef: RELEASE_3_23
RemoteSha: d650ed7b50a24d50247c41370c3b5143e2e2a3b0
NeedsCompilation: no
Packaged: 2026-07-02 07:13:03 UTC; root
Author: Stijn Hawinkel [cre, aut] (ORCID:
    <https://orcid.org/0000-0002-4501-5180>)
Maintainer: Stijn Hawinkel <stijn.hawinkel@psb.ugent.be>