Package: regionalpcs
Title: Summarizing Regional Methylation with Regional Principal
        Components Analysis
Version: 1.10.0
Authors@R: 
    person("Tiffany", "Eulalio", , "tyeulalio@gmail.com", 
           role = c("aut", "cre"), 
           comment = c(ORCID = "0000-0002-7084-9646"))
Description: Functions to summarize DNA methylation data using regional
        principal components. Regional principal components are
        computed using principal components analysis within genomic
        regions to summarize the variability in methylation levels
        across CpGs. The number of principal components is chosen using
        either the Marcenko-Pasteur or Gavish-Donoho method to identify
        relevant signal in the data.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
URL: https://github.com/tyeulalio/regionalpcs
BugReports: https://github.com/tyeulalio/regionalpcs/issues
biocViews: DNAMethylation, DifferentialMethylation, StatisticalMethod,
        Software, MethylationArray
Imports: dplyr, PCAtools, tibble, GenomicRanges
Suggests: knitr, rmarkdown, RMTstat, testthat (>= 3.0.0), BiocStyle,
        tidyr, minfiData, TxDb.Hsapiens.UCSC.hg19.knownGene, IRanges
Config/testthat/edition: 3
VignetteBuilder: knitr
Depends: R (>= 4.3.0)
Config/pak/sysreqs: libicu-dev zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 13:01:53 UTC
RemoteUrl: https://github.com/bioc/regionalpcs
RemoteRef: RELEASE_3_23
RemoteSha: 71eb79a26bea5c8dda243bf304ece17f5c7e9a3e
NeedsCompilation: no
Packaged: 2026-10-18 09:57:17 UTC; root
Author: Tiffany Eulalio [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-7084-9646>)
Maintainer: Tiffany Eulalio <tyeulalio@gmail.com>