Package: riboSeqR 1.46.0

Samuel Granjeaud

riboSeqR: Analysis of sequencing data from ribosome profiling experiments

Plotting functions, frameshift detection and parsing of sequencing data from ribosome profiling experiments.

Authors:Thomas J. Hardcastle [aut], Samuel Granjeaud [cre]

riboSeqR_1.46.0.tar.gz
riboSeqR_1.46.0.zip(r-4.7)riboSeqR_1.46.0.zip(r-4.6)riboSeqR_1.46.0.zip(r-4.5)
riboSeqR_1.46.0.tgz(r-4.6-any)riboSeqR_1.46.0.tgz(r-4.5-any)
riboSeqR_1.46.0.tar.gz(r-4.7-any)riboSeqR_1.46.0.tar.gz(r-4.6-any)
riboSeqR_1.46.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
riboSeqR/json (API)
NEWS

# Install 'riboSeqR' in R:
install.packages('riboSeqR', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/samgg/riboseqr/issues

On BioConductor:riboSeqR-1.47.0(bioc 3.24)riboSeqR-1.46.0(bioc 3.23)

sequencinggeneticsvisualizationriboseq

5.25 score 1 stars 14 scripts 496 downloads 7 mentions 14 exports 29 dependencies

Last updated from:ed29901639 (on RELEASE_3_23). Checks:1 FAILURE, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksFAILURE145
linux-devel-x86_64OK257
source / vignettesOK327
linux-release-x86_64OK247
macos-release-arm64OK124
macos-oldrel-arm64OK188
windows-develOK283
windows-releaseOK170
windows-oldrelOK191
wasm-releaseOK127

Exports:filterHitsfindCDSframeCountinglengthDistlibScaleslogoContextplotCDSplotFSplotTranscriptreadingFramereadRibodatarnaCountsshowsliceCounts

Dependencies:abindbaySeqBHBiocGenericsBiocParallelBiostringsbitopscodetoolscpp11crayonedgeRformatRfutile.loggerfutile.optionsgenericsGenomicRangesIRangeslambda.rlatticelimmalocfitRhtslibRsamtoolsS4VectorsSeqinfoseqLogosnowstatmodXVector

riboSeqR

Rendered fromriboSeqR.Rnwusingutils::Sweaveon Jun 04 2026.

Last update: 2016-10-28
Started: 2014-09-24