Package: rigvf 1.4.0

Michael Love

rigvf: R interface to the IGVF Catalog

The IGVF Catalog provides data on the impact of genomic variants on function. The `rigvf` package provides an interface to the IGVF Catalog, allowing easy integration with Bioconductor resources.

Authors:Martin Morgan [aut], Michael Love [aut, cre], NIH NHGRI UM1HG012003 [fnd]

rigvf_1.4.0.tar.gz
rigvf_1.4.0.zip(r-4.7)rigvf_1.4.0.zip(r-4.6)rigvf_1.4.0.zip(r-4.5)
rigvf_1.4.0.tgz(r-4.6-any)rigvf_1.4.0.tgz(r-4.5-any)
rigvf_1.4.0.tar.gz(r-4.7-any)rigvf_1.4.0.tar.gz(r-4.6-any)
rigvf_1.4.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
rigvf/json (API)
NEWS

# Install 'rigvf' in R:
install.packages('rigvf', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/igvf/rigvf/issues

Pkgdown/docs site:https://igvf.github.io

On BioConductor:rigvf-1.5.0(bioc 3.24)rigvf-1.4.0(bioc 3.23)

thirdpartyclientannotationvariantannotationfunctionalgenomicsgeneregulationgenomicvariationgenetarget

5.13 score 2 scripts 252 downloads 9 exports 37 dependencies

Last updated from:b5abb62318 (on RELEASE_3_23). Checks:1 NOTE, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE223
linux-devel-x86_64OK310
source / vignettesOK315
linux-release-x86_64OK293
macos-release-arm64OK145
macos-oldrel-arm64OK164
windows-develOK392
windows-releaseOK363
windows-oldrelOK371
wasm-releaseOK183

Exports:db_edgesdb_gene_elementsdb_gene_variantsdb_nodeselement_geneselementsgene_elementsgene_variantsvariant_genes

Dependencies:askpassBiocGenericscachemclicpp11curldplyrfastmapgenericsGenomicRangesgluehttr2IRangesjsonlitelifecyclemagrittrmemoiseopensslpillarpkgconfigpurrrR6rappdirsrjsonconsrlangS4VectorsSeqinfostringistringrsystibbletidyrtidyselectutf8vctrswhiskerwithr

Accessing data from the IGVF Catalog

Rendered fromrigvf.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2026-04-17
Started: 2025-03-10

Readme and manuals

Help Manual

Help pageTopics
Internal interface to ArangoDB REST APIarango arango_auth arango_collections arango_cursor arango_request
Query the IGVF Catalog via REST APIcatalog_queries elements element_genes gene_elements gene_variants variant_genes
Query the IGVF Catalog via ArangoDBdb_edges db_gene_elements db_gene_variants db_nodes db_queries
Package configuration global variable managementrigvf rigvf_config