Package: rnaEditr 1.22.0

Lanyu Zhang

rnaEditr: Statistical analysis of RNA editing sites and hyper-editing regions

RNAeditr analyzes site-specific RNA editing events, as well as hyper-editing regions. The editing frequencies can be tested against binary, continuous or survival outcomes. Multiple covariate variables as well as interaction effects can also be incorporated in the statistical models.

Authors:Lanyu Zhang [aut, cre], Gabriel Odom [aut], Tiago Silva [aut], Lissette Gomez [aut], Lily Wang [aut]

rnaEditr_1.22.0.tar.gz
rnaEditr_1.22.0.zip(r-4.7)rnaEditr_1.22.0.zip(r-4.6)rnaEditr_1.22.0.zip(r-4.5)
rnaEditr_1.22.0.tgz(r-4.6-any)rnaEditr_1.22.0.tgz(r-4.5-any)
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rnaEditr_1.22.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
rnaEditr/json (API)
NEWS

# Install 'rnaEditr' in R:
install.packages('rnaEditr', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/transbioinfolab/rnaeditr/issues

Datasets:
  • rnaedit_df - Example breast cancer RNA editing dataset.
  • t_rnaedit_df - Transposed breast cancer example dataset.

On BioConductor:rnaEditr-1.23.0(bioc 3.24)rnaEditr-1.22.0(bioc 3.23)

genetargetepigeneticsdimensionreductionfeatureextractionregressionsurvivalrnaseq

4.78 score 3 stars 9 scripts 326 downloads 27 exports 126 dependencies

Last updated from:1204b29b40 (on RELEASE_3_23). Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE212
linux-devel-x86_64WARNING394
source / vignettesOK339
linux-release-x86_64WARNING419
macos-release-arm64WARNING228
macos-oldrel-arm64WARNING272
windows-develWARNING309
windows-releaseWARNING300
windows-oldrelWARNING333
wasm-releaseOK164

Exports:AddMetaDataAllCloseByRegionsAllCoeditedRegionsAnnotateResultsCountSamplesPerGroupCreateEditingTableCreateOutputDFCreateRdropFindCorrelatedRegionsGetMinPairwiseCorGetSitesLocationsMakeModelFormulaMarkCoeditedSitesMaxSitesMeanSitesMedianSitesOrderSitesByLocationPC1SitesPlotEditingCorrelationsSingleCloseByRegionSingleCoeditedRegionSitesToRegionSummarizeAllRegionsSummarizeSingleRegionTestAssociationsTestSingleRegionTransformToGR

Dependencies:abindAnnotationDbiaskpassbackportsBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobbootbroombumphuntercachemcigarilloclicliprcodetoolscorrplotcpp11crayoncurlDBIDelayedArraydigestdoRNGdplyrfastmapforcatsforeachformatRformula.toolsfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicFeaturesGenomicRangesglmnetgluehavenhmshttrIRangesiteratorsjomojsonliteKEGGRESTlambda.rlatticelifecyclelimmalme4locfitlogistfmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmicemimeminqamitmlnlmenloptrnnetnumDerivopenssloperator.toolsordinalpanpillarpkgconfigplyrpngprettyunitsprogresspurrrR6rbibutilsRcppRcppEigenRCurlRdpackreadrreformulasrestfulrRhtslibrjsonrlangrngtoolsrpartRsamtoolsRSQLitertracklayerS4ArraysS4VectorsSeqinfoshapesnowSparseArraystatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttzdbucminfutf8vctrsvroomwithrXMLXVectoryaml

Introduction to rnaEditr

Lanyu Zhang, Gabriel Odom, Lily Wang

Rendered fromintroduction_to_rnaEditr.Rmdusingknitr::rmarkdownon Jun 02 2026.

Last update: 2020-10-07
Started: 2020-09-26