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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "rnaseqDTU" in publications use:'
type: software
license: Artistic-2.0
title: 'rnaseqDTU: RNA-seq workflow for differential transcript usage following Salmon
  quantification'
version: 1.32.0
doi: 10.12688/f1000research.15398.3
abstract: RNA-seq workflow for differential transcript usage (DTU) following Salmon
  quantification. This workflow uses Bioconductor packages tximport, DRIMSeq, and
  DEXSeq to perform a DTU analysis on simulated data. It also shows how to use stageR
  to perform two-stage testing of DTU, a statistical framework to screen at the gene
  level and then confirm which transcripts within the significant genes show evidence
  of DTU.
authors:
- family-names: Love
  given-names: Michael
  email: michaelisaiahlove@gmail.com
- family-names: Soneson
  given-names: Charlotte
- family-names: Patro
  given-names: Rob
preferred-citation:
  type: article
  title: 'Swimming downstream: statistical analysis of differential transcript usage
    following Salmon quantification'
  authors:
  - family-names: Love
    given-names: Michael I.
  - family-names: Soneson
    given-names: Charlotte
  - family-names: Patro
    given-names: Rob
  year: '2018'
  journal: F1000Research
  doi: 10.12688/f1000research.15398.3
repository: https://bioconductor.org/
repository-code: https://github.com/thelovelab/rnaseqDTU/
commit: b3617c9f988704eda74d12a619c7a2b2a4e3567f
url: https://github.com/thelovelab/rnaseqDTU/
date-released: '2018-06-27'
contact:
- family-names: Love
  given-names: Michael
  email: michaelisaiahlove@gmail.com