Package: rols 3.8.0

Laurent Gatto

rols: An R interface to the Ontology Lookup Service

The rols package is an interface to the Ontology Lookup Service (OLS) to access and query hundred of ontolgies directly from R.

Authors:Laurent Gatto [aut, cre], Tiage Chedraoui Silva [ctb], Andrew Clugston [ctb]

rols_3.8.0.tar.gz
rols_3.8.0.zip(r-4.7)rols_3.8.0.zip(r-4.6)rols_3.8.0.zip(r-4.5)
rols_3.8.0.tgz(r-4.6-any)rols_3.8.0.tgz(r-4.5-any)
rols_3.8.0.tar.gz(r-4.7-any)rols_3.8.0.tar.gz(r-4.6-any)
rols_3.8.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
rols/json (API)

# Install 'rols' in R:
install.packages('rols', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lgatto/rols/issues

Pkgdown/docs site:https://lgatto.github.io

On CRAN:

Conda:

immunooncologysoftwareannotationmassspectrometrygo

6.70 score 11 stars 1 packages 112 scripts 701 downloads 1 mentions 43 exports 18 dependencies

Last updated from:a075154591 (on RELEASE_3_23). Checks:1 WARNING, 7 ERROR, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksWARNING163
linux-devel-x86_64ERROR304
source / vignettesOK267
linux-release-x86_64ERROR275
macos-release-arm64ERROR162
macos-oldrel-arm64ERROR167
windows-develERROR430
windows-releaseERROR398
windows-oldrelERROR388
wasm-releaseOK128

Exports:allRowsancestorsas.olsTerm.data.frameas.olsTerms.data.framecharIsCVParamchildrencvCharToCVParCVParamdescendantsisObsoleteisRootlapplyolsConfigolsDescolsLinksolsLoadedolsNamespaceolsOntologiesolsOntologyolsPrefixolsPropertiesolsRowsolsRows<-olsSearchOlsSearcholsStatusolsTermolsTermsolsTitleolsUpdatedolsVersionontologyUrlparentsshowtermDesctermIdtermLabeltermLinkstermNamespacetermOntologytermPrefixtermSynonymunique

Dependencies:askpassBiobaseBiocGenericsclicurlgenericsgluehttr2jsonlitelifecyclemagrittropensslR6rappdirsrlangsysvctrswithr

An R interface to the Ontology Lookup Service

Laurent Gatto

Rendered fromrols.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2024-04-26
Started: 2016-03-13

Readme and manuals

Help Manual

Help pageTopics
Controlled Vocabularyas.character.CVParam charIsCVParam cvCharToCVPar CVParam rep,CVParam-method show,CVParam-method
olsOntologiesas.data.frame.olsOntologies lapply,olsOntologies-method length,olsOntologies-method olsConfig olsConfig,olsOntology olsConfig,olsOntology-method olsDesc olsDesc,character olsDesc,character-method olsDesc,olsOntologies olsDesc,olsOntologies-method olsDesc,olsOntology olsDesc,olsOntology-method olsLinks olsLinks,olsOntology olsLinks,olsOntology-method olsLoaded olsLoaded,character olsLoaded,character-method olsLoaded,olsOntologies olsLoaded,olsOntologies-method olsLoaded,olsOntology olsLoaded,olsOntology-method olsNamespace olsNamespace,character olsNamespace,character-method olsNamespace,olsOntologies olsNamespace,olsOntologies-method olsNamespace,olsOntology olsNamespace,olsOntology-method olsOntologies olsOntologies,missing-method olsOntology olsOntology,character-method olsOntology,olsOntology-method olsPrefix olsPrefix,character olsPrefix,character-method olsPrefix,olsOntologies olsPrefix,olsOntologies-method olsPrefix,olsOntology olsPrefix,olsOntology-method olsStatus olsStatus,character olsStatus,character-method olsStatus,olsOntologies olsStatus,olsOntologies-method olsStatus,olsOntology olsStatus,olsOntology-method olsTitle olsTitle,character olsTitle,character-method olsTitle,olsOntologies olsTitle,olsOntologies-method olsTitle,olsOntology olsTitle,olsOntology-method olsUpdated olsUpdated,character olsUpdated,character-method olsUpdated,olsOntologies olsUpdated,olsOntologies-method olsUpdated,olsOntology olsUpdated,olsOntology-method olsVersion olsVersion,character olsVersion,character-method olsVersion,olsOntologies olsVersion,olsOntologies-method olsVersion,olsOntology olsVersion,olsOntology-method ontologyUrl ontologyUrl,character ontologyUrl,character-method ontologyUrl,olsOntology ontologyUrl,olsOntology-method show,olsOntologies-method show,olsOntology-method [,olsOntologies-method [[,olsOntologies-method
Term Propertieslength,olsProperties-method olsProperties olsProperties,character olsProperties,character-method olsProperties,length olsProperties,olsOntology olsProperties,olsOntology-method olsProperties,olsTerm olsProperties,olsTerm-method olsProperties,olsTerms olsProperties,olsTerms-method olsProperty show,olsProperties-method show,olsProperty-method
Querying OLS'olsRows<-' .OlsSearch allRows as.data.frame.OlsSearch olsRows olsRows<- OlsSearch olsSearch show,OlsSearch-method
Ontology Termsancestors as.olsTerm.data.frame as.olsTerms.data.frame children descendants isObsolete isObsolete,olsTerm isObsolete,olsTerm-method isObsolete,olsTerms isObsolete,olsTerms-method isRoot isRoot,olsTerm isRoot,olsTerm-method isRoot,olsTerms isRoot,olsTerms-method lapply,olsTerms-method length,olsTerms-method olsTerm olsTerm,character-method olsTerm,olsOntology-method olsTerms olsTerms,character olsTerms,character-method olsTerms,olsOntology olsTerms,olsOntology-method parents show,olsTerm-method show,olsTerms-method termDesc termDesc,olsTerm termDesc,olsTerm-method termDesc,olsTerms termDesc,olsTerms-method termId termId,olsTerm termId,olsTerm-method termId,olsTerms termId,olsTerms-method termLabel termLabel,olsTerm termLabel,olsTerm-method termLabel,olsTerms termLabel,olsTerms-method termLinks termLinks,olsTerm termLinks,olsTerm-method termNamespace termNamespace,olsTerm termNamespace,olsTerm-method termNamespace,olsTerms termNamespace,olsTerms-method termOntology termOntology,olsTerm termOntology,olsTerm-method termOntology,olsTerms termOntology,olsTerms-method termPrefix termPrefix,olsTerm termPrefix,olsTerm-method termPrefix,olsTerms termPrefix,olsTerms-method termSynonym termSynonym,olsTerm termSynonym,olsTerm-method termSynonym,olsTerms termSynonym,olsTerms-method unique,olsTerms-method [,olsTerms-method [[,olsTerms-method