Introduction | Exploring available datasets | Searching by year | Getting datasets | Example: Returning all datasets with cell-type labels | Saving Data | Session Information
Package: scATAC.Explorer 1.18.0
Jonathan Wang
scATAC.Explorer: A Collection of Single-cell ATAC Sequencing Datasets and Corresponding Metadata
This package provides a tool to search and download a collection of publicly available single cell ATAC-seq datasets and their metadata. scATAC-Explorer aims to act as a single point of entry for users looking to study single cell ATAC-seq data. Users can quickly search available datasets using the metadata table and download datasets of interest for immediate analysis within R.
Authors:
scATAC.Explorer_1.18.0.tar.gz
scATAC.Explorer_1.18.0.tar.gz(r-4.7-any)scATAC.Explorer_1.18.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
scATAC.Explorer/json (API)
| # Install 'scATAC.Explorer' in R: |
| install.packages('scATAC.Explorer', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:scATAC.Explorer-1.19.0(data/experiment 3.24)scATAC.Explorer-1.18.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
singlecelldatasequencingdataexpressiondatageotissuegenomepackagetypedatadatapkg
Last updated from:4e8eadc2ed (on RELEASE_3_23). Checks:1 NOTE, 3 OK. Indexed: no.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 166 | ||
| linux-devel | OK | 381 | ||
| source / vignettes | OK | 230 | ||
| linux-release | OK | 396 |
Dependencies:abindaskpassbasiliskBiobaseBiocFileCacheBiocGenericsbitbit64blobcachemclicpp11curldata.tableDBIdbplyrDelayedArraydir.expirydplyrfastmapfilelockgenericsGenomicRangesglueherehttr2IRangesjsonlitelatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoiseopensslpillarpkgconfigpngpurrrR6rappdirsRcppRcppTOMLreticulaterlangrprojrootRSQLiteS4ArraysS4VectorsSeqinfoSingleCellExperimentSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectutf8vctrswithrXVectorzellkonverter
