Package: scConform 1.0.0

Daniela Corbetta
scConform: Conformal Inference for Cell Type Annotation
Builds prediction interval for cell type annotation using conformal inference and conformal risk control. It provides two main methods. The first one gives prediction intervals with coverage guarantees based on standard conformal inference. The second one instead gives hierarchical prediction intervals that are consistent with the cell ontology.
Authors:
scConform_1.0.0.tar.gz
scConform_1.0.0.zip(r-4.7)scConform_1.0.0.zip(r-4.6)scConform_1.0.0.zip(r-4.5)
scConform_1.0.0.tgz(r-4.6-any)scConform_1.0.0.tgz(r-4.5-any)
scConform_1.0.0.tar.gz(r-4.7-any)scConform_1.0.0.tar.gz(r-4.6-any)
scConform_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
scConform/json (API)
NEWS
| # Install 'scConform' in R: |
| install.packages('scConform', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ccb-hms/scconform/issues
On BioConductor:scConform-1.1.0(bioc 3.24)scConform-1.0.0(bioc 3.23)
softwareclassificationsinglecellannotationu24ca289073
Last updated from:11ab49c329 (on RELEASE_3_23). Checks:1 NOTE, 9 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 212 | ||
| linux-devel-x86_64 | OK | 374 | ||
| source / vignettes | OK | 520 | ||
| linux-release-x86_64 | OK | 357 | ||
| macos-release-arm64 | OK | 176 | ||
| macos-oldrel-arm64 | OK | 149 | ||
| windows-devel | OK | 1501 | ||
| windows-release | OK | 1087 | ||
| windows-oldrel | OK | 1272 | ||
| wasm-release | OK | 189 |
Exports:getCommonAncestorgetPredictionSetsplotResult
Dependencies:abindBHBiobaseBiocGenericsBiocParallelclicodetoolscpp11DelayedArrayformatRfutile.loggerfutile.optionsgenericsGenomicRangesgluegraphigraphIRangeslambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatspkgconfigRgraphvizrlangS4ArraysS4VectorsSeqinfosnowSparseArraySummarizedExperimentvctrsXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Return the common ancestor of the labels in the prediction set | getCommonAncestor |
| Get conformal prediction sets | getPredictionSets |
| Plot prediction sets | plotResult |