Package: scConform 1.0.0

Daniela Corbetta

scConform: Conformal Inference for Cell Type Annotation

Builds prediction interval for cell type annotation using conformal inference and conformal risk control. It provides two main methods. The first one gives prediction intervals with coverage guarantees based on standard conformal inference. The second one instead gives hierarchical prediction intervals that are consistent with the cell ontology.

Authors:Daniela Corbetta [aut, cre], Tram Nguyen [ctb], Nitesh Turaga [ctb], Ludwig Geistlinger [ctb]

scConform_1.0.0.tar.gz
scConform_1.0.0.zip(r-4.7)scConform_1.0.0.zip(r-4.6)scConform_1.0.0.zip(r-4.5)
scConform_1.0.0.tgz(r-4.6-any)scConform_1.0.0.tgz(r-4.5-any)
scConform_1.0.0.tar.gz(r-4.7-any)scConform_1.0.0.tar.gz(r-4.6-any)
scConform_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
scConform/json (API)
NEWS

# Install 'scConform' in R:
install.packages('scConform', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ccb-hms/scconform/issues

On BioConductor:scConform-1.1.0(bioc 3.24)scConform-1.0.0(bioc 3.23)

softwareclassificationsinglecellannotationu24ca289073

5.69 score 7 stars 242 downloads 3 exports 36 dependencies

Last updated from:11ab49c329 (on RELEASE_3_23). Checks:1 NOTE, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE212
linux-devel-x86_64OK374
source / vignettesOK520
linux-release-x86_64OK357
macos-release-arm64OK176
macos-oldrel-arm64OK149
windows-develOK1501
windows-releaseOK1087
windows-oldrelOK1272
wasm-releaseOK189

Exports:getCommonAncestorgetPredictionSetsplotResult

Dependencies:abindBHBiobaseBiocGenericsBiocParallelclicodetoolscpp11DelayedArrayformatRfutile.loggerfutile.optionsgenericsGenomicRangesgluegraphigraphIRangeslambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatspkgconfigRgraphvizrlangS4ArraysS4VectorsSeqinfosnowSparseArraySummarizedExperimentvctrsXVector

Conformal Prediction for cell type annotation

Rendered fromscConform.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2026-03-20
Started: 2024-06-17