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# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "scMultiSim" in publications use:'
type: software
license: Artistic-2.0
title: 'scMultiSim: Simulation of Multi-Modality Single Cell Data Guided By Gene Regulatory
  Networks and Cell-Cell Interactions'
version: 1.8.0
doi: 10.32614/CRAN.package.scMultiSim
abstract: scMultiSim simulates paired single cell RNA-seq, single cell ATAC-seq and
  RNA velocity data, while incorporating mechanisms of gene regulatory networks, chromatin
  accessibility and cell-cell interactions. It allows users to tune various parameters
  controlling the amount of each biological factor, variation of gene-expression levels,
  the influence of chromatin accessibility on RNA sequence data, and so on. It can
  be used to benchmark various computational methods for single cell multi-omics data,
  and to assist in experimental design of wet-lab experiments.
authors:
- family-names: Li
  given-names: Hechen
  email: hli691@gatech.edu
  orcid: https://orcid.org/0000-0003-4907-429X
- family-names: Zhang
  given-names: Xiuwei
  email: zhangxiuwei03@gmail.com
- family-names: Zhang
  given-names: Ziqi
  email: ziqi.zhang@gatech.edu
- family-names: Squires
  given-names: Michael
  email: squiresmf@gatech.edu
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/ZhangLabGT/scMultiSim
commit: 9f6591bea4ffee69dc5d234dcd92ee9edba2c474
url: https://zhanglabgt.github.io/scMultiSim/
date-released: '2026-04-28'
contact:
- family-names: Li
  given-names: Hechen
  email: hli691@gatech.edu
  orcid: https://orcid.org/0000-0003-4907-429X