Package: scPassport 1.0.0

Sedat Kacar

scPassport: Passport System for Single-Cell Objects

Stamps Seurat, SingleCellExperiment, and SummarizedExperiment objects with a persistent metadata passport. For Seurat objects the passport is stored in the misc slot; for SingleCellExperiment and SummarizedExperiment objects it is stored in the metadata slot. Tracks animal info, experiment details, lineage (parent/child relationships), RDS registry numbers, processing logs, and custom fields. Includes an interactive Shiny gadget to fill and update the passport, and a read mode to print the full passport to console. The passport persists inside the RDS file with no external files needed.

Authors:Sedat Kacar [aut, cre]

scPassport_1.0.0.tar.gz
scPassport_1.0.0.zip(r-4.7)scPassport_1.0.0.zip(r-4.6)scPassport_1.0.0.zip(r-4.5)
scPassport_1.0.0.tgz(r-4.6-x86_64)scPassport_1.0.0.tgz(r-4.6-arm64)scPassport_1.0.0.tgz(r-4.5-x86_64)scPassport_1.0.0.tgz(r-4.5-arm64)
scPassport_1.0.0.tar.gz(r-4.7-arm64)scPassport_1.0.0.tar.gz(r-4.7-x86_64)scPassport_1.0.0.tar.gz(r-4.6-arm64)scPassport_1.0.0.tar.gz(r-4.6-x86_64)
scPassport_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
scPassport/json (API)
NEWS

# Install 'scPassport' in R:
install.packages('scPassport', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sedatkacar56/scpassport/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:scPassport-1.1.0(bioc 3.24)scPassport-1.0.0(bioc 3.23)

singlecelldataimportvisualizationinfrastructurecpp

4.78 score 3 stars 262 downloads 3 exports 34 dependencies

Last updated from:bc4afe6fb9 (on RELEASE_3_23). Checks:12 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE184
linux-devel-arm64NOTE216
linux-devel-x86_64NOTE252
source / vignettesOK264
linux-release-arm64NOTE196
linux-release-x86_64NOTE212
macos-release-arm64NOTE120
macos-release-x86_64NOTE226
macos-oldrel-arm64NOTE112
macos-oldrel-x86_64NOTE248
windows-develNOTE182
windows-releaseNOTE154
windows-oldrelNOTE149
wasm-releaseOK163

Exports:log_stepread_passportscPassport

Dependencies:base64encBiocGenericsbslibcachemclicommonmarkdigestfastmapfontawesomefsgenericsgluehtmltoolshttpuvjquerylibjsonlitelaterlifecyclemagrittrmemoisemimeminiUIotelpromisesR6rappdirsRcpprlangS4Vectorssassshinysourcetoolswithrxtable

Getting Started with scPassport

Sedat Kacar

Rendered fromscPassport.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2026-03-30
Started: 2026-03-28