Package: scRecover
Type: Package
Title: scRecover for imputation of single-cell RNA-seq data
Version: 1.28.0
Date: 2019-04-28
Author: Zhun Miao, Xuegong Zhang <zhangxg@tsinghua.edu.cn>
Maintainer: Zhun Miao <miaoz13@tsinghua.org.cn>
Description: scRecover is an R package for imputation of single-cell
        RNA-seq (scRNA-seq) data. It will detect and impute dropout
        values in a scRNA-seq raw read counts matrix while keeping the
        real zeros unchanged, since there are both dropout zeros and
        real zeros in scRNA-seq data. By combination with scImpute,
        SAVER and MAGIC, scRecover not only detects dropout and real
        zeros at higher accuracy, but also improve the downstream
        clustering and visualization results.
License: GPL
Encoding: UTF-8
Depends: R (>= 3.4.0)
Imports: stats, utils, methods, graphics, doParallel, foreach,
        parallel, penalized, kernlab, rsvd, Matrix (>= 1.2-14), MASS
        (>= 7.3-45), pscl (>= 1.4.9), bbmle (>= 1.0.18), gamlss (>=
        4.4-0), preseqR (>= 4.0.0), SAVER (>= 1.1.1), BiocParallel (>=
        1.12.0)
Suggests: knitr, rmarkdown, SingleCellExperiment, testthat
VignetteBuilder: knitr
URL: https://miaozhun.github.io/scRecover
BugReports: https://github.com/miaozhun/scRecover/issues
biocViews: GeneExpression, SingleCell, RNASeq, Transcriptomics,
        Sequencing, Preprocessing, Software
RoxygenNote: 6.0.1
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:50:03 UTC
RemoteUrl: https://github.com/bioc/scRecover
RemoteRef: RELEASE_3_23
RemoteSha: 815f862bd40c40c7c4ddb93ad1f608856531685b
NeedsCompilation: no
Packaged: 2026-06-12 10:52:04 UTC; root