| Title: | The package contains examples of single cell data used in vignettes and examples of the scTHI package; data contain both tumor cells and immune cells from public dataset of glioma |
|---|---|
| Description: | Data for the vignette and tutorial of the package scTHI. |
| Authors: | Francesca Pia Caruso [aut], Michele Ceccarelli [aut, cre] |
| Maintainer: | Michele Ceccarelli <[email protected]> |
| License: | GPL-2 |
| Version: | 1.24.0 |
| Built: | 2026-10-10 11:14:19 UTC |
| Source: | https://github.com/bioc/scTHI.data |
A 21673 x 5527 matrix patient PatientBCH836 form Filbin, M. G., Tirosh, I., Hovestadt, V., Shaw, M. L., Escalante, L. E., Mathewson, N. D., ... & Haberler, C. (2018). Developmentaland oncogenic programs in H3K27M gliomas dissected by single-cell RNA-seq. Science, 360(6386), 331-335. H3K27
H3K27H3K27
An object of class matrix with 21673 rows and 527 columns.
A dataframe 527x9 for the matrix of patient PatientBCH836 form Filbin, M. G., Tirosh, I., Hovestadt, V., Shaw, M. L., Escalante, L. E., Mathewson, N. D., ... & Haberler, C. (2018). Developmentaland oncogenic programs in H3K27M gliomas dissected by single-cell RNA-seq. Science, 360(6386), 331-335. H3K27.annotation
H3K27.metaH3K27.meta
An object of class data.frame with 527 rows and 9 columns.
A 17584 x 608 matrix patient PatientBCH836 form Venteicher AS, Tirosh I, Hebert C, Yizhak K et al. Decoupling genetics, lineages, and microenvironment in IDH-mutant gliomas by single-cell RNA-seq. Science 2017 Mar 31;355(6332) MGH45
MGH45MGH45
An object of class matrix with 17584 rows and 608 columns.
A 608 x 2 dataframe with the annotation for the MGH4 matrix Venteicher AS, Tirosh I, Hebert C, Yizhak K et al. Decoupling genetics, lineages, and microenvironment in IDH-mutant gliomas by single-cell RNA-seq. Science 2017 Mar 31;355(6332) MGH45.annotation
MGH45.annotationMGH45.annotation
An object of class data.frame with 608 rows and 2 columns.
A 2000 x 100 matrix from the wiki manual to showcase the use of scTHI scExample
scExamplescExample
An object of class matrix with 2000 rows and 100 columns.