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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "scTreeViz" in publications use:'
type: software
license: Artistic-2.0
title: 'scTreeViz: R/Bioconductor package to interactively explore and visualize single
  cell RNA-seq datasets with hierarhical annotations'
version: 1.18.0
doi: 10.32614/CRAN.package.scTreeViz
abstract: scTreeViz provides classes to support interactive data aggregation and visualization
  of single cell RNA-seq datasets with hierarchies for e.g. cell clusters at different
  resolutions. The `TreeIndex` class provides methods to manage hierarchy and split
  the tree at a given resolution or across resolutions. The `TreeViz` class extends
  `SummarizedExperiment` and can performs quick aggregations on the count matrix defined
  by clusters.
authors:
- family-names: Kancherla
  given-names: Jayaram
  email: jayaram.kancherla@gmail.com
- family-names: Corrada Bravo
  given-names: Hector
  email: hcorrada@gmail.com
- family-names: Zinat
  given-names: Kazi Tasnim
  email: kzintas@umd.edu
- family-names: Hicks
  given-names: Stephanie
  email: shicks19@jhu.edu
repository: https://bioc-release.r-universe.dev
commit: ee2f52b642eec52c556b1b3ed1df5baddc299eaf
date-released: '2026-04-28'
contact:
- family-names: Kancherla
  given-names: Jayaram
  email: jayaram.kancherla@gmail.com