# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "scanMiR" in publications use:'
type: software
license: GPL-3.0-only
title: 'scanMiR: scanMiR'
version: 1.18.0
doi: 10.1093/bioinformatics/btac110
identifiers:
- type: doi
  value: 10.32614/CRAN.package.scanMiR
abstract: A set of tools for working with miRNA affinity models (KdModels), efficiently
  scanning for miRNA binding sites, and predicting target repression. It supports
  scanning using miRNA seeds, full miRNA sequences (enabling 3' alignment) and KdModels,
  and includes the prediction of slicing and TDMD sites. Finally, it includes utility
  and plotting functions (e.g. for the visual representation of miRNA-target alignment).
authors:
- family-names: Germain
  given-names: Pierre-Luc
  email: pierre-luc.germain@hest.ethz.ch
  orcid: https://orcid.org/0000-0003-3418-4218
- family-names: Soutschek
  given-names: Michael
  email: michael.soutschek@hest.ethz.ch
- family-names: Gross
  given-names: Fridolin
  email: fridolin.gross@u-bordeaux.fr
preferred-citation:
  type: article
  title: 'scanMiR: a biochemically based toolkit for versatile and efficient microRNA
    target prediction'
  authors:
  - family-names: Soutschek
    given-names: Michael
    email: michael.soutschek@hest.ethz.ch
  - family-names: Gross
    given-names: Fridolin
    email: fridolin.gross@u-bordeaux.fr
  - family-names: Schratt
    given-names: Gerhard
  - family-names: Germain
    given-names: Pierre-Luc
    email: pierre-luc.germain@hest.ethz.ch
    orcid: https://orcid.org/0000-0003-3418-4218
  year: '2022'
  issue: '9'
  issn: '-3444'
  notes: package version 1.18.0
  doi: 10.1093/bioinformatics/btac110
  journal: Bioinformatics
  start: '4939'
repository: https://bioc-release.r-universe.dev
commit: c5e42b0c0834fc9d4bbe9f6054a13149daf5ff7f
date-released: '2025-07-24'
contact:
- family-names: Germain
  given-names: Pierre-Luc
  email: pierre-luc.germain@hest.ethz.ch
  orcid: https://orcid.org/0000-0003-3418-4218