# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "sccomp" in publications use:'
type: software
license: GPL-3.0-only
title: 'sccomp: Differential Composition and Variability Analysis for Single-Cell
  Data'
version: 2.4.0
doi: 10.1073/pnas.2203828120
identifiers:
- type: doi
  value: 10.32614/CRAN.package.sccomp
abstract: Comprehensive R package for differential composition and variability analysis
  in single-cell RNA sequencing, CyTOF, and microbiome data. Provides robust Bayesian
  modeling with outlier detection, random effects, and advanced statistical methods
  for cell type proportion analysis. Features include probabilistic outlier identification,
  mixed-effect modeling, differential variability testing, and comprehensive visualization
  tools. Perfect for cancer research, immunology, developmental biology, and single-cell
  genomics applications.
authors:
- family-names: Mangiola
  given-names: Stefano
  email: stefano.mangiola@unimelb.edu.au
- family-names: Roth-Schulze
  given-names: Alexandra J.
- family-names: Trussart
  given-names: Marie
- family-names: Zozaya-Valdés
  given-names: Enrique
- family-names: Ma
  given-names: Mengyao
- family-names: Gao
  given-names: Zijie
- family-names: Rubin
  given-names: Alan F.
- family-names: Speed
  given-names: Terence P.
- family-names: Shim
  given-names: Heejung
- family-names: Papenfuss
  given-names: Anthony T.
preferred-citation:
  type: article
  title: 'sccomp: Robust differential composition and variability analysis for single-cell
    data'
  authors:
  - family-names: Mangiola
    given-names: Stefano
    email: stefano.mangiola@unimelb.edu.au
  - family-names: Roth-Schulze
    given-names: Alexandra J.
  - family-names: Trussart
    given-names: Marie
  - family-names: Zozaya-Valdés
    given-names: Enrique
  - family-names: Ma
    given-names: Mengyao
  - family-names: Gao
    given-names: Zijie
  - family-names: Rubin
    given-names: Alan F.
  - family-names: Speed
    given-names: Terence P.
  - family-names: Shim
    given-names: Heejung
  - family-names: Papenfuss
    given-names: Anthony T.
  year: '2023'
  journal: PNAS
  doi: 10.1073/pnas.2203828120
  volume: '120'
  issue: '33'
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/MangiolaLaboratory/sccomp
commit: e0b24e07d53c5c30c2057f8600955117c8c4cde3
url: https://github.com/MangiolaLaboratory/sccomp
date-released: '2024-01-15'
contact:
- family-names: Mangiola
  given-names: Stefano
  email: stefano.mangiola@unimelb.edu.au