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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "scider" in publications use:'
type: software
license: GPL-3.0-only
title: 'scider: Spatial cell-type inter-correlation by density in R'
version: 1.10.0
doi: 10.32614/CRAN.package.scider
abstract: scider is an user-friendly R package providing functions to model the global
  density of cells in a slide of spatial transcriptomics data. All functions in the
  package are built based on the SpatialExperiment object, allowing integration into
  various spatial transcriptomics-related packages from Bioconductor. After modelling
  density, the package allows for several downstream analysis, including colocalization
  analysis, boundary detection analysis and differential density analysis.
authors:
- family-names: Li
  given-names: Mengbo
  email: li.me@wehi.edu.au
  orcid: https://orcid.org/0000-0002-9666-5810
- family-names: Liu
  given-names: Ning
  email: liu.n@wehi.edu.au
  orcid: https://orcid.org/0000-0002-9487-9305
- family-names: Nguyen
  given-names: Quoc Hoang
  email: nguyen.q@wehi.edu.au
  orcid: https://orcid.org/0009-0007-2828-7567
- family-names: Chen
  given-names: Yunshun
  email: yuchen@wehi.edu.au
  orcid: https://orcid.org/0000-0003-4911-5653
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/ChenLaboratory/scider
commit: d0a091a5c349492f52f3c3a754f7b48d1e01748e
url: https://chenlaboratory.github.io/scider/
date-released: '2026-04-28'
contact:
- family-names: Chen
  given-names: Yunshun
  email: yuchen@wehi.edu.au
  orcid: https://orcid.org/0000-0003-4911-5653