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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "scifer" in publications use:'
type: software
license: MIT
title: 'scifer: Scifer: Single-Cell Immunoglobulin Filtering of Sanger Sequences'
version: 1.14.0
doi: 10.1016/j.immuno.2024.100046
identifiers:
- type: doi
  value: 10.32614/CRAN.package.scifer
abstract: Have you ever index sorted cells in a 96 or 384-well plate and then sequenced
  using Sanger sequencing? If so, you probably had some struggles to either check
  the electropherogram of each cell sequenced manually, or when you tried to identify
  which cell was sorted where after sequencing the plate. Scifer was developed to
  solve this issue by performing basic quality control of Sanger sequences and merging
  flow cytometry data from probed single-cell sorted B cells with sequencing data.
  scifer can export summary tables, 'fasta' files, electropherograms for visual inspection,
  and generate reports.
authors:
- family-names: Arcoverde Cerveira
  given-names: Rodrigo
  email: rodrigo.arcoverdi@gmail.com
  orcid: https://orcid.org/0000-0002-1145-2534
- family-names: Ols
  given-names: Sebastian
  orcid: https://orcid.org/0000-0001-9784-7176
preferred-citation:
  type: article
  title: 'Scifer: An R/Bioconductor package for large-scale integration of Sanger
    sequencing and flow cytometry data of index-sorted single cells'
  authors:
  - family-names: Cerveira
    given-names: Arcoverde
  - family-names: al.
    given-names: Rodrigo et
  journal: ImmunoInformatics
  year: '2024'
  volume: '16'
  issue: '100046'
  doi: 10.1016/j.immuno.2024.100046
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/rodrigarc/scifer
commit: 1661b6e49653d56740c4559e06c3df648bae8423
url: https://github.com/rodrigarc/scifer
date-released: '2026-04-28'
contact:
- family-names: Arcoverde Cerveira
  given-names: Rodrigo
  email: rodrigo.arcoverdi@gmail.com
  orcid: https://orcid.org/0000-0002-1145-2534