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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "scruff" in publications use:'
type: software
license: MIT
title: 'scruff: Single Cell RNA-Seq UMI Filtering Facilitator (scruff)'
version: 1.30.0
doi: 10.32614/CRAN.package.scruff
abstract: A pipeline which processes single cell RNA-seq (scRNA-seq) reads from CEL-seq
  and CEL-seq2 protocols. Demultiplex scRNA-seq FASTQ files, align reads to reference
  genome using Rsubread, and generate UMI filtered count matrix. Also provide visualizations
  of read alignments and pre- and post-alignment QC metrics.
authors:
- family-names: Wang
  given-names: Zhe
  email: zhe@bu.edu
- family-names: Hu
  given-names: Junming
  email: hjunming@bu.edu
- family-names: Campbell
  given-names: Joshua
  email: camp@bu.edu
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/campbio/scruff
commit: b8ea4f78da0603db4b4785798636948ad8266345
url: https://github.com/campbio/scruff
date-released: '2024-03-27'
contact:
- family-names: Wang
  given-names: Zhe
  email: zhe@bu.edu