Package: seqLogo 1.78.0

Robert Ivanek

seqLogo: Sequence logos for DNA sequence alignments

seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).

Authors:Oliver Bembom [aut], Robert Ivanek [aut, cre]

seqLogo_1.78.0.tar.gz
seqLogo_1.78.0.zip(r-4.7-any)seqLogo_1.78.0.zip(r-4.6-any)seqLogo_1.78.0.zip(r-4.5-any)
seqLogo_1.78.0.tgz(r-4.6-any)seqLogo_1.78.0.tgz(r-4.5-any)
seqLogo_1.78.0.tar.gz(r-4.7-any)seqLogo_1.78.0.tar.gz(r-4.6-any)
seqLogo_1.78.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
seqLogo/json (API)

# Install 'seqLogo' in R:

install.packages('seqLogo', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ivanek/seqlogo/issues

On BioConductor:seqLogo-1.79.0(bioc 3.24)seqLogo-1.78.0(bioc 3.23)

sequencematching

10.13 score 5 stars 30 packages 504 scripts 24 mentions 8 exports 0 dependencies

Last updated from:a7902a4e87 (on RELEASE_3_23). Checks:1 WARNING, 9 OK. Indexed: no.

Target	Result	Time
bioc-checks	WARNING	155
linux-devel-x86_64	OK	209
source / vignettes	OK	175
linux-release-x86_64	OK	153
macos-release-arm64	OK	93
macos-oldrel-arm64	OK	108
windows-devel	OK	112
windows-release	OK	106
windows-oldrel	OK	66
wasm-release	OK	104

Exports:consensus ic makePWM plot pwm seqLogo show summary

Dependencies:

Sequence logos for DNA sequence alignments

Rendered fromseqLogo.Rmdusingknitr::rmarkdown

Last update: 2020-05-08
Started: 2020-05-08

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Constructing a pwm object	makePWM
An S4 class to represent a PWM matrix.	alphabet consensus consensus,pwm-method ic ic,pwm-method plot,pwm,ANY-method pwm pwm,pwm-method pwm-class show,pwm-method summary,pwm-method
Plot a sequence logo for a given position weight matrix	seqLogo