Changes in version 1.1.1 o First hard release August 2021 Changes in version 1.0.4 o Major updates to accomodate package specific tests, and devtools/BiocCheck o S4 compatability o merge_lanes can now merge flowcell lanes o make_conv can now generate conversion tables between for example UCSC, NCBI and Ensembl chromosome names Changes in version 1.0.3 o Streamlined PAC generation and annotation o Vignette update Changes in version 1.0.2 o The fundation of functions for sequence-based counting and annotation is set. Changes in version 1.0.1 o First github version in 2020 o Working version for constructing PAC objects (S3) Changes in version 0.99.18 o Many minor updates to comply with Bioconducter review Changes in version 0.99.8 o New attempt with Bioconducter o Many updates o Make_count now support chunking and on-disk procesing for low-end systems o More efficient Examples o Minor bug corrections o Quick start in vignette Changes in version 0.99.4 o Correcting notes from bioconductor reviewer o Less time consuming examples and tests Changes in version 0.99.3 o Correcting notes from bioconductor reviewer Changes in version 0.99.2 o Correcting a few errors/warnings discovered by bioconductor.org Changes in version 0.99.1 o Preparations for Bioconductor o Updates in vignette and manuals to accomodate more autonomous examples o Some minor bug fixes and changes to the reanno workflow Changes in version 0.99.0 o Due to rules for Bioconductor submissions version number was decreased --Biocundoctor submisson ----------