Package: shinyepico 1.20.0

Octavio Morante-Palacios

shinyepico: ShinyÉPICo

ShinyÉPICo is a graphical pipeline to analyze Illumina DNA methylation arrays (450k or EPIC). It allows to calculate differentially methylated positions and differentially methylated regions in a user-friendly interface. Moreover, it includes several options to export the results and obtain files to perform downstream analysis.

Authors:Octavio Morante-Palacios [cre, aut]

shinyepico_1.20.0.tar.gz
shinyepico_1.20.0.zip(r-4.7)shinyepico_1.20.0.zip(r-4.6)shinyepico_1.20.0.zip(r-4.5)
shinyepico_1.20.0.tgz(r-4.6-any)shinyepico_1.20.0.tgz(r-4.5-any)
shinyepico_1.20.0.tar.gz(r-4.7-any)shinyepico_1.20.0.tar.gz(r-4.6-any)
shinyepico_1.20.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
shinyepico/json (API)
NEWS

# Install 'shinyepico' in R:
install.packages('shinyepico', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/omorante/shiny_epico/issues

On BioConductor:shinyepico-1.21.0(bioc 3.24)shinyepico-1.20.0(bioc 3.23)

differentialmethylationdnamethylationmicroarraypreprocessingqualitycontrol

5.08 score 6 stars 5 scripts 358 downloads 1 exports 200 dependencies

Last updated from:6a03033c5e (on RELEASE_3_23). Checks:1 WARNING, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksWARNING655
linux-devel-x86_64OK776
source / vignettesOK705
linux-release-x86_64OK714
macos-release-arm64OK412
macos-oldrel-arm64OK319
windows-develOK641
windows-releaseOK560
windows-oldrelOK702
wasm-releaseOK650

Exports:run_shinyepico

Dependencies:abindannotateAnnotationDbiaskpassassertthatbase64base64encbeanplotBHBiobaseBiocGenericsBiocIObiocmakeBiocParallelBiostringsbitbit64bitopsblobbslibbumphuntercacachemcallrcaToolscigarilloclicliprclustercodetoolscolorspacecommonmarkcpp11crayoncrosstalkcurldata.tableDBIDelayedArrayDelayedMatrixStatsdendextenddigestdir.expirydoParalleldoRNGdplyrDTeggevaluatefarverfastmapfilelockfontawesomeforeachformatRfsfutile.loggerfutile.optionsgclusgenefiltergenericsGenomicAlignmentsGenomicFeaturesGenomicRangesGEOqueryggplot2gluegplotsgridExtragtablegtoolsh5mreadHDF5Arrayheatmaplyhighrhmshtmltoolshtmlwidgetshttpuvhttrhttr2illuminaioIRangesisobanditeratorsjquerylibjsonliteKEGGRESTKernSmoothknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmalocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmclustmemoisemgcvmimeminfimulttestnlmenor1mixopensslotelpermutepillarpkgconfigplotlyplyrpngpreprocessCoreprettyunitsprocessxprogresspromisespspurrrqapquadprogR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRCurlreadrregistryrentrezreshapereshape2restfulrrhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangrmarkdownrngtoolsRsamtoolsRSQLitertracklayerrvestS4ArraysS4VectorsS7sassscalesscrimeselectrSeqinfoseriationshinyshinycssloadersshinyjsshinythemesshinyWidgetssiggenessnowsourcetoolsSparseArraysparseMatrixStatsstatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttinytexTSPtzdbutf8vctrsveganviridisviridisLitevroomwebshotwithrxfunXMLxml2xtableXVectoryamlzip

shinyÉPICo: the user's guide

Octavio Morante-Palacios, Esteban Ballestar

Rendered fromshiny_epico.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2020-11-20
Started: 2020-03-27