NEWS

---

signatureSearchData 1.9.3 (2021-12-16)

• Add LINCS2 database with file name of lincs2020.h5

signatureSearchData 1.9.2 (2021-12-06)

• Add dest_path parameter to getCmapCEL function

signatureSearchData 1.2.1 (2020-08-14)

• Edited vignette containing 'DEGs and Cutoffs Definition' subsections to document how to defining query DEGs and gene set reference database by setting LFC scores and FDR cutoffs.

signatureSearchData 1.1.0 (2019-10-23)

• Initial version

signatureSearchData 0.99.10 (2019-10-22)

• Stored data in ExperimentHub
• Saved LINCS gctx file to hdf5 file in batches
• Saved cmap databases (cmap, cmap_rank, cmap_expr) to hdf5 files
• Loaded hdf5 file into R as SummarizedExperiment object
  • hdf5 file includes matrix, rownames and colnames

signatureSearchData 0.99.0 (2019-04-02)

• Needed 50Gb memory to load matrix in LINCS gctx file and save as HDF5 backed SE object