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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "signifinder" in publications use:'
type: software
license: AGPL-3.0-only
title: 'signifinder: Collection and implementation of public transcriptional cancer
  signatures'
version: 1.14.0
doi: 10.1093/nargab/lqae138
identifiers:
- type: doi
  value: 10.32614/CRAN.package.signifinder
abstract: signifinder is an R package for computing and exploring a compendium of
  tumor signatures. It allows to compute a variety of signatures coming from public
  literature, based on gene expression values, and return single-sample (-cell/-spot)
  scores. Currently, signifinder collects more than 70 distinct signatures, relating
  to multiple tumors and multiple cancer processes.
authors:
- family-names: Pirrotta
  given-names: Stefania
  email: stefania.pirrotta@phd.unipd.it
  orcid: https://orcid.org/0009-0004-0030-217X
- family-names: Calura
  given-names: Enrica
  email: enrica.calura@unipd.it
  orcid: https://orcid.org/0000-0001-8463-2432
preferred-citation:
  type: article
  title: Exploring public cancer gene expression signatures across bulk, single-cell
    and spatial transcriptomics data with signifinder Bioconductor package
  authors:
  - family-names: Pirrotta
    given-names: Stefania
    email: stefania.pirrotta@phd.unipd.it
    orcid: https://orcid.org/0009-0004-0030-217X
  - family-names: Masatti
    given-names: Laura
  - family-names: Bortolato
    given-names: Anna
  - family-names: Corrà
    given-names: Anna
  - family-names: Pedrini
    given-names: Fabiola
  - family-names: Aere
    given-names: Martina
  - family-names: Esposito
    given-names: Giovanni
  - family-names: Martini
    given-names: Paolo
  - family-names: Risso
    given-names: Davide
  - family-names: Romualdi
    given-names: Chiara
  - family-names: Calura
    given-names: Enrica
    email: enrica.calura@unipd.it
    orcid: https://orcid.org/0000-0001-8463-2432
  journal: NAR Genom Bioinform
  year: '2024'
  url: https://doi.org/10.1093/nargab/lqae138
  doi: 10.1093/nargab/lqae138
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/CaluraLab/signifinder
commit: e7ce92113c9c0f71da6f5bfe265d05fec5f5b720
url: https://github.com/CaluraLab/signifinder
date-released: '2026-04-28'
contact:
- family-names: Pirrotta
  given-names: Stefania
  email: stefania.pirrotta@phd.unipd.it
  orcid: https://orcid.org/0009-0004-0030-217X